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The map label for this gene is secF [H]

Identifier: 83593098

GI number: 83593098

Start: 2055169

End: 2056224

Strand: Reverse

Name: secF [H]

Synonym: Rru_A1763

Alternate gene names: 83593098

Gene position: 2056224-2055169 (Counterclockwise)

Preceding gene: 83593099

Following gene: 83593097

Centisome position: 47.24

GC content: 69.41

Gene sequence:

>1056_bases
ATGCCGCGTCCCTTCGCCCGACTGACCGCCGACTTCCACTATGATTTCCTTGTCAGCCGCGCGCGGGTGATGGCGGCTTC
GGCGGCGCTGCTCCTCGTCTGCCTGCTCGCCCTTGGCCTGCGCGGCCTGGATCTGGGCATCGATTTCACCGGCGGGCTGG
TGGTCGAGGCGCGGACGGCGACGGCGATGGACCCGGTCGACCTGCGCCAGAGCTTGCGGGCGAGCGTCGTCGGCGAGGTC
GACGTGACCACCTATGGCGAGGATGGCCGTAGCGTCACCGTGCGGGTCGGCCGCCAGACCGGCGGCGATCAGGCCATGCT
GCAGGCCCTGGAGGGGGTCAAGACGGCTTTGGGAGAGGGGGCGACCTATCGCAGGACCAATCTGGTCGGCCCGACCGTGG
GCGGCGAGGCGACGATCGCCGGGCTGCTGACCGTCGCCCTCGCCCTGGTGCTGATCGCGGCCTATGTGTGGCTGCGCTTC
GACTGGCATTACGCCCTGGGCGTCGTCCTTGCCCTGAGCCATGACGTGGTCGCCGTGCTTGGCCTTTACGCCCTGTTTCA
GATCCCCTTCGATCTGACCAGCATCGCCGCCTTGCTGACGGTGGCCTGCTATTCGATCAACGACACGGTGGTGATCTTTG
ATCGGGTGCGCGAGGAACTGGCCCTTACCCCCGACGCCCCGCTGGCCACGGTGGTCAACAAGTCGATCAATCGCACCCTG
GCCCGCACCATCGTGCTGTCGGGCAGCACCCTGGTCACCATGGCCTGCCTCGCCCTGCTCGGCGGGCCGCAGTTGCGCGG
CTTCGCCCTGGCGCTTATCTGGGGAACGGTGGTCGGCACGCTGTCGTCGATCTATGTCGCCGTTCCGGCGCTGATGGCCT
TTCGCGGCCGCTCCAAGACGGCGGACGACGGTCGGGAGGGCGAGGACGACGGGGAGGATACTCCTCCGCCCCGCGCCGCC
CCGGGCAAAGCCAAAAACGCCCCCGCCGTCGCCGCCGGGAAACCCGCCCAGGCCAAGCCCGCCGCCGCTCCGCCGTCCCG
CAAGGAACGCCGCTAA

Upstream 100 bases:

>100_bases
CGCCCTGTTCACGGCGATGCTGCTCAACCGACTGATCGTCGCGCTCTGGCTGCGTCTGGCGCGGCCGAAAACCATTCCCC
TTTAAAGGGTCCGCCCCATC

Downstream 100 bases:

>100_bases
CTCCCTGATCTGGGACAAAAAAGGGACGCAGATCCATGGAATTGAAGATGGAAATTCCCGCCAGCCGGCGGGTGGTCGAA
GCCTATGGCGATGGCGGCTT

Product: protein translocase subunit secF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MPRPFARLTADFHYDFLVSRARVMAASAALLLVCLLALGLRGLDLGIDFTGGLVVEARTATAMDPVDLRQSLRASVVGEV
DVTTYGEDGRSVTVRVGRQTGGDQAMLQALEGVKTALGEGATYRRTNLVGPTVGGEATIAGLLTVALALVLIAAYVWLRF
DWHYALGVVLALSHDVVAVLGLYALFQIPFDLTSIAALLTVACYSINDTVVIFDRVREELALTPDAPLATVVNKSINRTL
ARTIVLSGSTLVTMACLALLGGPQLRGFALALIWGTVVGTLSSIYVAVPALMAFRGRSKTADDGREGEDDGEDTPPPRAA
PGKAKNAPAVAAGKPAQAKPAAAPPSRKERR

Sequences:

>Translated_351_residues
MPRPFARLTADFHYDFLVSRARVMAASAALLLVCLLALGLRGLDLGIDFTGGLVVEARTATAMDPVDLRQSLRASVVGEV
DVTTYGEDGRSVTVRVGRQTGGDQAMLQALEGVKTALGEGATYRRTNLVGPTVGGEATIAGLLTVALALVLIAAYVWLRF
DWHYALGVVLALSHDVVAVLGLYALFQIPFDLTSIAALLTVACYSINDTVVIFDRVREELALTPDAPLATVVNKSINRTL
ARTIVLSGSTLVTMACLALLGGPQLRGFALALIWGTVVGTLSSIYVAVPALMAFRGRSKTADDGREGEDDGEDTPPPRAA
PGKAKNAPAVAAGKPAQAKPAAAPPSRKERR
>Mature_350_residues
PRPFARLTADFHYDFLVSRARVMAASAALLLVCLLALGLRGLDLGIDFTGGLVVEARTATAMDPVDLRQSLRASVVGEVD
VTTYGEDGRSVTVRVGRQTGGDQAMLQALEGVKTALGEGATYRRTNLVGPTVGGEATIAGLLTVALALVLIAAYVWLRFD
WHYALGVVLALSHDVVAVLGLYALFQIPFDLTSIAALLTVACYSINDTVVIFDRVREELALTPDAPLATVVNKSINRTLA
RTIVLSGSTLVTMACLALLGGPQLRGFALALIWGTVVGTLSSIYVAVPALMAFRGRSKTADDGREGEDDGEDTPPPRAAP
GKAKNAPAVAAGKPAQAKPAAAPPSRKERR

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=305, Percent_Identity=35.4098360655738, Blast_Score=182, Evalue=3e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 36875; Mature: 36744

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPFARLTADFHYDFLVSRARVMAASAALLLVCLLALGLRGLDLGIDFTGGLVVEARTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECEECCCCEEEEECCC
TAMDPVDLRQSLRASVVGEVDVTTYGEDGRSVTVRVGRQTGGDQAMLQALEGVKTALGEG
CCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
ATYRRTNLVGPTVGGEATIAGLLTVALALVLIAAYVWLRFDWHYALGVVLALSHDVVAVL
CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GLYALFQIPFDLTSIAALLTVACYSINDTVVIFDRVREELALTPDAPLATVVNKSINRTL
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ARTIVLSGSTLVTMACLALLGGPQLRGFALALIWGTVVGTLSSIYVAVPALMAFRGRSKT
HHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ADDGREGEDDGEDTPPPRAAPGKAKNAPAVAAGKPAQAKPAAAPPSRKERR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRPFARLTADFHYDFLVSRARVMAASAALLLVCLLALGLRGLDLGIDFTGGLVVEARTA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECEECCCCEEEEECCC
TAMDPVDLRQSLRASVVGEVDVTTYGEDGRSVTVRVGRQTGGDQAMLQALEGVKTALGEG
CCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
ATYRRTNLVGPTVGGEATIAGLLTVALALVLIAAYVWLRFDWHYALGVVLALSHDVVAVL
CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GLYALFQIPFDLTSIAALLTVACYSINDTVVIFDRVREELALTPDAPLATVVNKSINRTL
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ARTIVLSGSTLVTMACLALLGGPQLRGFALALIWGTVVGTLSSIYVAVPALMAFRGRSKT
HHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ADDGREGEDDGEDTPPPRAAPGKAKNAPAVAAGKPAQAKPAAAPPSRKERR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA