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The map label for this gene is ynfJ [C]

Identifier: 83592869

GI number: 83592869

Start: 1806881

End: 1808464

Strand: Direct

Name: ynfJ [C]

Synonym: Rru_A1534

Alternate gene names: 83592869

Gene position: 1806881-1808464 (Clockwise)

Preceding gene: 83592868

Following gene: 83592871

Centisome position: 41.51

GC content: 70.08

Gene sequence:

>1584_bases
ATGCAACTAAACTCGCCGGGCGTTCTTTTTCGCCTGCGCCGTCTGCTGCGCACCCAGTCGCTGGTGCTGGGCGCCCTGGC
CGTTGGCATCGGTCTGCTGGTCGGGGCGGGCACCGTGGCCTTTCGCGAGGCCATCGATCTGGTGCAGACGCTGTTTTATG
GCGGCGATGATCTTTACCTTGCCCGTCTCGCCCGGAGTCTGCCCGGCTGGCTGGTGGTTCTTGGGCCCACGGCCGGCGGT
CTGCTGGTCGGGCTTTATTACGCCAAGGTGATGCCGGGCGGCAAACCCCAGGGCGTGGCCCAGGTGATCGGCGCGGTGGC
GCGGACGGGGGGACGGATGCGGGCCGGCGACGGCGTTCTCGCCGCTTGTGGCAGCGCCTTGTCCCTGGGCTGCGGCGCCT
CGGTCGGGCGCGAGGGCCCGGCCGTCCACTTGGGGGCGGCCTTGGCCGCCGGGCTGGCGGGCCGGCTGCGCCTTGGCCCC
GGTCTGGCGCGTACCGTGCTGGGCTGCGGCGTGGCAGCGGCGGTGGCGGCGTCGTTCAATGCGCCGATCGCCGGGGCGCT
GTTCGCCGGCGAGGTGGTGATCGGCCATTACGCCCTGTCGGCCTTCGCGCCGATCGTCGTCTCCAGCGTGGTGGCGACGG
TGCTGTCGCGCGGTTGGTTTGGCGATTTTCCCGCGTTCATCCTGCCGCATCTGACCCTGGCCTCGGCCTGGGAGTTCCCG
GCCTTCGTCGTGCTGGGCGGCTTGTGCGGATTGGTCGCCGTGGCCTTCATGCGCGGGGTTTTCCTGGCCGGCGGTTTGGC
CTCCGCCCTGCGCCTACCGGTGGTGTTGCGGCCGATGGTGGCGGGGGCGCTGGTCGGTCTGCTCGCCCTGGTCCTGCCCG
AAGTTCTGGGGGTTGGCTATGAGGCGACCGATCAGGTGCTGAAGGGGGCCTATCATCTTGATCTGCTGCTTCCCCTGATC
CTCGCCAAGCTGGCGGCTTCGGTGATCTGCCTGGGCTTTGGCTTCGGCGGCGGGGTTTTTAGCCCCTCCTTGACCCTGGG
CGCCTTGGTTGGCGGCGCCTTCGGGCTGGCGATCGCCCTGGTGGCCCCGGTTTCGGCGTCGGGCGCCTATGCCCTGATCG
GCATGGGCGCCCTGTCTGCGGCGGTGCTGGGCGCGCCGATTTCCACCACCTTGATCGTTTTCGAGCTGACCGGAGACTAC
GCCTTGTCGGTGGGAACCATGGTCGCCGCCGTGGTCGCCGGGGCGCTCAGCCGGCAGATCTGCGGCCATCTGTCGTTCTT
TCGCTGGCAATTGGCCAAGCAGGGGATCGATCTCGAGGTGCCCAAGGCCGAGGGGGTGTTGCGGGTATTGCGCATCGGCG
ATCTGACGTGGTCGGCGCCGCCACAGCGGCCGGCGGGTGGGGCGGCCCTGGTCAGCGTCACCGCCGAGGAAACCCTGGCC
GTTGCCCTGGCCCGGCTCAGGCAGAGTGGAGCCGAGGGGCTGGTGGTGGTCGATGACCAGGGGCGGCCGATCGGCGGTTT
GCGCGAAACGGATCTGGCCTGGGCCTGCGTGCGGGCCCTCGACGAGGCGGAGGGCGACCGATAA

Upstream 100 bases:

>100_bases
CCGGGGCGCGGCTTCAGGGGGCGGATTTCCTCGAGGCCAATCTGTCGGGTGCGGTGTGGACCGAGGGCGGCCGGATCTGC
GCCGAGGGATCGATCGGGCA

Downstream 100 bases:

>100_bases
ACCGGCATCGGCAGAAGAGGGGCGCAAATCGTCGTCGCGCTTTGGTCCAGAGTGCCCGGGATTTGCTAAGGCGCCTGTTC
GGAAAGGGGCGGGGGGGCGG

Product: Cl- channel, voltage gated

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MQLNSPGVLFRLRRLLRTQSLVLGALAVGIGLLVGAGTVAFREAIDLVQTLFYGGDDLYLARLARSLPGWLVVLGPTAGG
LLVGLYYAKVMPGGKPQGVAQVIGAVARTGGRMRAGDGVLAACGSALSLGCGASVGREGPAVHLGAALAAGLAGRLRLGP
GLARTVLGCGVAAAVAASFNAPIAGALFAGEVVIGHYALSAFAPIVVSSVVATVLSRGWFGDFPAFILPHLTLASAWEFP
AFVVLGGLCGLVAVAFMRGVFLAGGLASALRLPVVLRPMVAGALVGLLALVLPEVLGVGYEATDQVLKGAYHLDLLLPLI
LAKLAASVICLGFGFGGGVFSPSLTLGALVGGAFGLAIALVAPVSASGAYALIGMGALSAAVLGAPISTTLIVFELTGDY
ALSVGTMVAAVVAGALSRQICGHLSFFRWQLAKQGIDLEVPKAEGVLRVLRIGDLTWSAPPQRPAGGAALVSVTAEETLA
VALARLRQSGAEGLVVVDDQGRPIGGLRETDLAWACVRALDEAEGDR

Sequences:

>Translated_527_residues
MQLNSPGVLFRLRRLLRTQSLVLGALAVGIGLLVGAGTVAFREAIDLVQTLFYGGDDLYLARLARSLPGWLVVLGPTAGG
LLVGLYYAKVMPGGKPQGVAQVIGAVARTGGRMRAGDGVLAACGSALSLGCGASVGREGPAVHLGAALAAGLAGRLRLGP
GLARTVLGCGVAAAVAASFNAPIAGALFAGEVVIGHYALSAFAPIVVSSVVATVLSRGWFGDFPAFILPHLTLASAWEFP
AFVVLGGLCGLVAVAFMRGVFLAGGLASALRLPVVLRPMVAGALVGLLALVLPEVLGVGYEATDQVLKGAYHLDLLLPLI
LAKLAASVICLGFGFGGGVFSPSLTLGALVGGAFGLAIALVAPVSASGAYALIGMGALSAAVLGAPISTTLIVFELTGDY
ALSVGTMVAAVVAGALSRQICGHLSFFRWQLAKQGIDLEVPKAEGVLRVLRIGDLTWSAPPQRPAGGAALVSVTAEETLA
VALARLRQSGAEGLVVVDDQGRPIGGLRETDLAWACVRALDEAEGDR
>Mature_527_residues
MQLNSPGVLFRLRRLLRTQSLVLGALAVGIGLLVGAGTVAFREAIDLVQTLFYGGDDLYLARLARSLPGWLVVLGPTAGG
LLVGLYYAKVMPGGKPQGVAQVIGAVARTGGRMRAGDGVLAACGSALSLGCGASVGREGPAVHLGAALAAGLAGRLRLGP
GLARTVLGCGVAAAVAASFNAPIAGALFAGEVVIGHYALSAFAPIVVSSVVATVLSRGWFGDFPAFILPHLTLASAWEFP
AFVVLGGLCGLVAVAFMRGVFLAGGLASALRLPVVLRPMVAGALVGLLALVLPEVLGVGYEATDQVLKGAYHLDLLLPLI
LAKLAASVICLGFGFGGGVFSPSLTLGALVGGAFGLAIALVAPVSASGAYALIGMGALSAAVLGAPISTTLIVFELTGDY
ALSVGTMVAAVVAGALSRQICGHLSFFRWQLAKQGIDLEVPKAEGVLRVLRIGDLTWSAPPQRPAGGAALVSVTAEETLA
VALARLRQSGAEGLVVVDDQGRPIGGLRETDLAWACVRALDEAEGDR

Specific function: Unknown

COG id: COG0038

COG function: function code P; Chloride channel protein EriC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081943, Length=423, Percent_Identity=30.2600472813239, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1786350, Length=275, Percent_Identity=29.8181818181818, Blast_Score=83, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014743
- InterPro:   IPR001807 [H]

Pfam domain/function: PF00654 Voltage_CLC [H]

EC number: NA

Molecular weight: Translated: 53125; Mature: 53125

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNSPGVLFRLRRLLRTQSLVLGALAVGIGLLVGAGTVAFREAIDLVQTLFYGGDDLYL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHH
ARLARSLPGWLVVLGPTAGGLLVGLYYAKVMPGGKPQGVAQVIGAVARTGGRMRAGDGVL
HHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCHH
AACGSALSLGCGASVGREGPAVHLGAALAAGLAGRLRLGPGLARTVLGCGVAAAVAASFN
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
APIAGALFAGEVVIGHYALSAFAPIVVSSVVATVLSRGWFGDFPAFILPHLTLASAWEFP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCH
AFVVLGGLCGLVAVAFMRGVFLAGGLASALRLPVVLRPMVAGALVGLLALVLPEVLGVGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EATDQVLKGAYHLDLLLPLILAKLAASVICLGFGFGGGVFSPSLTLGALVGGAFGLAIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VAPVSASGAYALIGMGALSAAVLGAPISTTLIVFELTGDYALSVGTMVAAVVAGALSRQI
HHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
CGHLSFFRWQLAKQGIDLEVPKAEGVLRVLRIGDLTWSAPPQRPAGGAALVSVTAEETLA
HHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHH
VALARLRQSGAEGLVVVDDQGRPIGGLRETDLAWACVRALDEAEGDR
HHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQLNSPGVLFRLRRLLRTQSLVLGALAVGIGLLVGAGTVAFREAIDLVQTLFYGGDDLYL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHH
ARLARSLPGWLVVLGPTAGGLLVGLYYAKVMPGGKPQGVAQVIGAVARTGGRMRAGDGVL
HHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCHH
AACGSALSLGCGASVGREGPAVHLGAALAAGLAGRLRLGPGLARTVLGCGVAAAVAASFN
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
APIAGALFAGEVVIGHYALSAFAPIVVSSVVATVLSRGWFGDFPAFILPHLTLASAWEFP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCH
AFVVLGGLCGLVAVAFMRGVFLAGGLASALRLPVVLRPMVAGALVGLLALVLPEVLGVGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EATDQVLKGAYHLDLLLPLILAKLAASVICLGFGFGGGVFSPSLTLGALVGGAFGLAIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VAPVSASGAYALIGMGALSAAVLGAPISTTLIVFELTGDYALSVGTMVAAVVAGALSRQI
HHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
CGHLSFFRWQLAKQGIDLEVPKAEGVLRVLRIGDLTWSAPPQRPAGGAALVSVTAEETLA
HHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHH
VALARLRQSGAEGLVVVDDQGRPIGGLRETDLAWACVRALDEAEGDR
HHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]