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The map label for this gene is pupB [H]

Identifier: 83592776

GI number: 83592776

Start: 1702830

End: 1705313

Strand: Direct

Name: pupB [H]

Synonym: Rru_A1440

Alternate gene names: 83592776

Gene position: 1702830-1705313 (Clockwise)

Preceding gene: 83592775

Following gene: 83592778

Centisome position: 39.12

GC content: 63.45

Gene sequence:

>2484_bases
ATGGGGGACGTGGTGAACGGCAAGCTGACGATTGGCCGGTGGGGGCGGCGTTTGCTGATGGGCGTATCGGTACTCGCCCT
GGGACAGACGGCGCTGATCGCCCGGGCCGAGGATGGACCGGCGGCGGGCGGGCCAACGGCTCAGGCGGGCGCGGTTTACG
TTTTTGATATCGCGACAAAGCCGCTGCCCCGGGCCCTGGCCGATTTCTCGGCGGTGACCGGCCTTCAGGTGCTCTACAGC
GGATCGGCCGCTTACAGCCATACCGCGCCGGCGCTCCAGGGGTCTTATGGGGCGCGACAGGCGCTGGGCCTGCTGCTGGC
CGGCAGCGGTCTGGCGGCGCGCTTCACCTCGCCGACCTCGATCACCCTCGAGGCGATCAAGGACGCCGAGGACGCTTTGG
TGGTCGATCCGATCGCCGTTGAAGGCGCCTTGCTGCGCGGCGGATTGCCCGGCACCGAGGGCACGGGGTCCTATGCGACC
GGGGCGACCAACACGGCGACCAAGCTCACTCTCTCGCCGCGCGAAACCCCGCAATCGGTCAGCATCATGACCCGCCAGCG
CATGGACGATCAGAACCTCAATGAAATGGCCGATGTTCTCGATGAAACGGTGGGGATGACCTTCAAGGAGGGCGGGCCGA
TCGGCTCGGATGCCAACGCCGTTTATTCCCGGGGCTTCGAGGTTCACAATTTCCAGGTCAACGGCGTCAGCCGCTCGACC
AAATACGGCTTTGGCGACGATCTCTCCGATATGGCGATCTATGACCGGGTCGAGGTGGTGCGCGGCGCCACCGGGTTGAT
GAGCGGCGTTGGCGATCCGTCGGCCAGCGTCAATCTGGTGCGCAAGCGGCCGACCGATACCTTCCAAAGCGCGGCCGAGC
TGCAGGCGGGAAGCTGGAACCGCTATCGGGCCGAAGGCGATGTCGCCAGCCCGCTGATCGAAAGCGGCCGCCTGCGCGGC
CGGCTGGTCGCCGCCTATCAGCAAGGCGAGTCCTATATCGACCGCCTGGAGACGTCGAAAAAGGTTCTTTATGGGGTTAT
CGAAGCCGATTTGACCGAGGATACCTTACTGACCGCCGGGGTCCAGTATCAGCACCATCGCTCCGATCACGCCTCGCGCG
CCGGCATCCCGATGTTTTATTCCGATGGCGGGCGGACGGATTTTTCCCGCTCCACCAGTTCGGCGGCCGATTGGGCCTAT
TTCGACAATACCCAACTCACCACCTTCGCCGCGCTCGAACAGCGTTTCGACAACGATTGGACGGTTACCCTCGATCTCGA
ACATGCCCGGCGGTCCTATGACGCGCTGATCGGTTACGGCATTCGCGGCACGCCCGACCGCGAGACCGGGGCGGGGATGG
GCCTCTATGCCGGGCGTTGGGCCGCCAAACCGATCCAGAACTCGGTCGGCCTCACCGCCACCGGCCCCATTACCCTGTTT
GGTCGCCAGCACGATCTGATGGCGGGCTTCAGCACCTATCACGCCAGCTACGAAGACCCGAGCTATCCTTTGTGGTCGAT
CCCCGGCTATGACACGTCGATCGGCAATTACTACACCTGGAACGGTGCGATCGCCGAACCCGTGCTTGAGGAAAACGGCA
GCGAAAGTTTCCTGGAACGTCAGGTCGCGGGCTATATGGCGACCCGTTTGCGGCCAACGGATGATCTATCGATCATCCTC
GGCGGCCGGCTGACTTCGTGGAGCCAGGAGACCGAGTCCCGCTACGCCGATGGCTCGTCGAGCTATTCCGAGCAGTCGGA
AAACGGCAAAGTCACCCCCTATGCCGGAATCGTCTATGACCTGAGCGACATTTGGTCGGTCTATGCCAGCTACACCAGCA
TCTTCAAGCCGCAGAGCCTGCAAGACGCCGACGGTGGTTATCTGCAGCCCCTGGTCGGCGACGCCTATGAAGCCGGCATC
AAGGCCGCGTTCTACGACGGCCGGTTGAACGCCAGTCTGGCGGTGTTCCGCATCAATCAGGACAACCTGGGGGTCGCCGA
TGGCGCGGCGCTGACGCCGAGCGGCGGTCAGGCCTATAAGGCGGCCAAAGGCACCACCAGCCAGGGCATCGAACTGGAAC
TGACCGGCGAGGTCTTGCCGGGTTGGCAGGTTGGCGGCGGCTATGCCCATGCCTCGCCGACCGATGTCAAAGGCAAGCGG
CTGCTAACCGATATCCCGCGCGATACGGTCAAGGTGTTCTCGACCTATCGCTTGCCGGGGGCCTTCGATCGCCTGATGAT
CGGCGGCAATCTGCGTTGGCAGGGGGCGATCTATGCCAATAACGTTGGCCCCAACGGCGAACGCGCCACCCAGAAGGCCT
TTTCGGTCGTCGATGTCCTGGCCAGCTACCGCCTCACCGAGGCGGTCACCGCCACCCTTAACGTCAATAACATCTTCGAC
GAAAAGTATTATTCCAGCATCGGCGCCATCGGCTATTACGGCGAACCGCGCAATGCGATGCTCAGCGTGAAGGCGAGCTT
CTAA

Upstream 100 bases:

>100_bases
ATCGCGGGCGAGGGGGGATGATCGCCGCTGGCTTCGTCTCACCCGCAGATGCGATTGCGGAGCGGTCGCGATTTTGGCGT
TTTTGGAACCGGGGACGATG

Downstream 100 bases:

>100_bases
TCGCCTCGGCCAAGCCCCGTTCGGGCCCCGGCGTAGGGGGCCAGGACGGGGCCGGCGCAGTTGCGGGCGCCCGCGACGAA
GGTGGGTAAATCCCCCTCAT

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 827; Mature: 826

Protein sequence:

>827_residues
MGDVVNGKLTIGRWGRRLLMGVSVLALGQTALIARAEDGPAAGGPTAQAGAVYVFDIATKPLPRALADFSAVTGLQVLYS
GSAAYSHTAPALQGSYGARQALGLLLAGSGLAARFTSPTSITLEAIKDAEDALVVDPIAVEGALLRGGLPGTEGTGSYAT
GATNTATKLTLSPRETPQSVSIMTRQRMDDQNLNEMADVLDETVGMTFKEGGPIGSDANAVYSRGFEVHNFQVNGVSRST
KYGFGDDLSDMAIYDRVEVVRGATGLMSGVGDPSASVNLVRKRPTDTFQSAAELQAGSWNRYRAEGDVASPLIESGRLRG
RLVAAYQQGESYIDRLETSKKVLYGVIEADLTEDTLLTAGVQYQHHRSDHASRAGIPMFYSDGGRTDFSRSTSSAADWAY
FDNTQLTTFAALEQRFDNDWTVTLDLEHARRSYDALIGYGIRGTPDRETGAGMGLYAGRWAAKPIQNSVGLTATGPITLF
GRQHDLMAGFSTYHASYEDPSYPLWSIPGYDTSIGNYYTWNGAIAEPVLEENGSESFLERQVAGYMATRLRPTDDLSIIL
GGRLTSWSQETESRYADGSSSYSEQSENGKVTPYAGIVYDLSDIWSVYASYTSIFKPQSLQDADGGYLQPLVGDAYEAGI
KAAFYDGRLNASLAVFRINQDNLGVADGAALTPSGGQAYKAAKGTTSQGIELELTGEVLPGWQVGGGYAHASPTDVKGKR
LLTDIPRDTVKVFSTYRLPGAFDRLMIGGNLRWQGAIYANNVGPNGERATQKAFSVVDVLASYRLTEAVTATLNVNNIFD
EKYYSSIGAIGYYGEPRNAMLSVKASF

Sequences:

>Translated_827_residues
MGDVVNGKLTIGRWGRRLLMGVSVLALGQTALIARAEDGPAAGGPTAQAGAVYVFDIATKPLPRALADFSAVTGLQVLYS
GSAAYSHTAPALQGSYGARQALGLLLAGSGLAARFTSPTSITLEAIKDAEDALVVDPIAVEGALLRGGLPGTEGTGSYAT
GATNTATKLTLSPRETPQSVSIMTRQRMDDQNLNEMADVLDETVGMTFKEGGPIGSDANAVYSRGFEVHNFQVNGVSRST
KYGFGDDLSDMAIYDRVEVVRGATGLMSGVGDPSASVNLVRKRPTDTFQSAAELQAGSWNRYRAEGDVASPLIESGRLRG
RLVAAYQQGESYIDRLETSKKVLYGVIEADLTEDTLLTAGVQYQHHRSDHASRAGIPMFYSDGGRTDFSRSTSSAADWAY
FDNTQLTTFAALEQRFDNDWTVTLDLEHARRSYDALIGYGIRGTPDRETGAGMGLYAGRWAAKPIQNSVGLTATGPITLF
GRQHDLMAGFSTYHASYEDPSYPLWSIPGYDTSIGNYYTWNGAIAEPVLEENGSESFLERQVAGYMATRLRPTDDLSIIL
GGRLTSWSQETESRYADGSSSYSEQSENGKVTPYAGIVYDLSDIWSVYASYTSIFKPQSLQDADGGYLQPLVGDAYEAGI
KAAFYDGRLNASLAVFRINQDNLGVADGAALTPSGGQAYKAAKGTTSQGIELELTGEVLPGWQVGGGYAHASPTDVKGKR
LLTDIPRDTVKVFSTYRLPGAFDRLMIGGNLRWQGAIYANNVGPNGERATQKAFSVVDVLASYRLTEAVTATLNVNNIFD
EKYYSSIGAIGYYGEPRNAMLSVKASF
>Mature_826_residues
GDVVNGKLTIGRWGRRLLMGVSVLALGQTALIARAEDGPAAGGPTAQAGAVYVFDIATKPLPRALADFSAVTGLQVLYSG
SAAYSHTAPALQGSYGARQALGLLLAGSGLAARFTSPTSITLEAIKDAEDALVVDPIAVEGALLRGGLPGTEGTGSYATG
ATNTATKLTLSPRETPQSVSIMTRQRMDDQNLNEMADVLDETVGMTFKEGGPIGSDANAVYSRGFEVHNFQVNGVSRSTK
YGFGDDLSDMAIYDRVEVVRGATGLMSGVGDPSASVNLVRKRPTDTFQSAAELQAGSWNRYRAEGDVASPLIESGRLRGR
LVAAYQQGESYIDRLETSKKVLYGVIEADLTEDTLLTAGVQYQHHRSDHASRAGIPMFYSDGGRTDFSRSTSSAADWAYF
DNTQLTTFAALEQRFDNDWTVTLDLEHARRSYDALIGYGIRGTPDRETGAGMGLYAGRWAAKPIQNSVGLTATGPITLFG
RQHDLMAGFSTYHASYEDPSYPLWSIPGYDTSIGNYYTWNGAIAEPVLEENGSESFLERQVAGYMATRLRPTDDLSIILG
GRLTSWSQETESRYADGSSSYSEQSENGKVTPYAGIVYDLSDIWSVYASYTSIFKPQSLQDADGGYLQPLVGDAYEAGIK
AAFYDGRLNASLAVFRINQDNLGVADGAALTPSGGQAYKAAKGTTSQGIELELTGEVLPGWQVGGGYAHASPTDVKGKRL
LTDIPRDTVKVFSTYRLPGAFDRLMIGGNLRWQGAIYANNVGPNGERATQKAFSVVDVLASYRLTEAVTATLNVNNIFDE
KYYSSIGAIGYYGEPRNAMLSVKASF

Specific function: Specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions [H]

COG id: COG4773

COG function: function code P; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787344, Length=709, Percent_Identity=36.1071932299013, Blast_Score=449, Evalue=1e-127,
Organism=Escherichia coli, GI1787024, Length=725, Percent_Identity=22.2068965517241, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1786344, Length=699, Percent_Identity=22.7467811158798, Blast_Score=90, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR011662
- InterPro:   IPR000531
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 88549; Mature: 88418

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDVVNGKLTIGRWGRRLLMGVSVLALGQTALIARAEDGPAAGGPTAQAGAVYVFDIATK
CCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
PLPRALADFSAVTGLQVLYSGSAAYSHTAPALQGSYGARQALGLLLAGSGLAARFTSPTS
CHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCHHHHHHEEEECCCCEEEECCCCE
ITLEAIKDAEDALVVDPIAVEGALLRGGLPGTEGTGSYATGATNTATKLTLSPRETPQSV
EEEEECCCCCCCEEECCHHHCCHHEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHH
SIMTRQRMDDQNLNEMADVLDETVGMTFKEGGPIGSDANAVYSRGFEVHNFQVNGVSRST
HHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHCCCEEEEEEECCCCCCC
KYGFGDDLSDMAIYDRVEVVRGATGLMSGVGDPSASVNLVRKRPTDTFQSAAELQAGSWN
CCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCC
RYRAEGDVASPLIESGRLRGRLVAAYQQGESYIDRLETSKKVLYGVIEADLTEDTLLTAG
CEECCCCHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHEEEHHHCCCCCCHHEECC
VQYQHHRSDHASRAGIPMFYSDGGRTDFSRSTSSAADWAYFDNTQLTTFAALEQRFDNDW
CCHHHCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCC
TVTLDLEHARRSYDALIGYGIRGTPDRETGAGMGLYAGRWAAKPIQNSVGLTATGPITLF
EEEEEHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEECCCEEEE
GRQHDLMAGFSTYHASYEDPSYPLWSIPGYDTSIGNYYTWNGAIAEPVLEENGSESFLER
CCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEECCCHHCHHHHCCCCHHHHHH
QVAGYMATRLRPTDDLSIILGGRLTSWSQETESRYADGSSSYSEQSENGKVTPYAGIVYD
HHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEC
LSDIWSVYASYTSIFKPQSLQDADGGYLQPLVGDAYEAGIKAAFYDGRLNASLAVFRINQ
HHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHCCHHHHCCEEEEECCCCCCEEEEEEECC
DNLGVADGAALTPSGGQAYKAAKGTTSQGIELELTGEVLPGWQVGGGYAHASPTDVKGKR
CCCCCCCCCEECCCCCCEEEECCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCH
LLTDIPRDTVKVFSTYRLPGAFDRLMIGGNLRWQGAIYANNVGPNGERATQKAFSVVDVL
HHHHCCHHHHHHHHHCCCCCCHHHEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
ASYRLTEAVTATLNVNNIFDEKYYSSIGAIGYYGEPRNAMLSVKASF
HHHHHHHHEEEEEECCHHHHHHHHHHHCCEEECCCCCCEEEEEEECC
>Mature Secondary Structure 
GDVVNGKLTIGRWGRRLLMGVSVLALGQTALIARAEDGPAAGGPTAQAGAVYVFDIATK
CCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
PLPRALADFSAVTGLQVLYSGSAAYSHTAPALQGSYGARQALGLLLAGSGLAARFTSPTS
CHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCHHHHHHEEEECCCCEEEECCCCE
ITLEAIKDAEDALVVDPIAVEGALLRGGLPGTEGTGSYATGATNTATKLTLSPRETPQSV
EEEEECCCCCCCEEECCHHHCCHHEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHH
SIMTRQRMDDQNLNEMADVLDETVGMTFKEGGPIGSDANAVYSRGFEVHNFQVNGVSRST
HHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHCCCEEEEEEECCCCCCC
KYGFGDDLSDMAIYDRVEVVRGATGLMSGVGDPSASVNLVRKRPTDTFQSAAELQAGSWN
CCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCC
RYRAEGDVASPLIESGRLRGRLVAAYQQGESYIDRLETSKKVLYGVIEADLTEDTLLTAG
CEECCCCHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHEEEHHHCCCCCCHHEECC
VQYQHHRSDHASRAGIPMFYSDGGRTDFSRSTSSAADWAYFDNTQLTTFAALEQRFDNDW
CCHHHCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCC
TVTLDLEHARRSYDALIGYGIRGTPDRETGAGMGLYAGRWAAKPIQNSVGLTATGPITLF
EEEEEHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEECCCEEEE
GRQHDLMAGFSTYHASYEDPSYPLWSIPGYDTSIGNYYTWNGAIAEPVLEENGSESFLER
CCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEECCCHHCHHHHCCCCHHHHHH
QVAGYMATRLRPTDDLSIILGGRLTSWSQETESRYADGSSSYSEQSENGKVTPYAGIVYD
HHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEC
LSDIWSVYASYTSIFKPQSLQDADGGYLQPLVGDAYEAGIKAAFYDGRLNASLAVFRINQ
HHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHCCHHHHCCEEEEECCCCCCEEEEEEECC
DNLGVADGAALTPSGGQAYKAAKGTTSQGIELELTGEVLPGWQVGGGYAHASPTDVKGKR
CCCCCCCCCEECCCCCCEEEECCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCH
LLTDIPRDTVKVFSTYRLPGAFDRLMIGGNLRWQGAIYANNVGPNGERATQKAFSVVDVL
HHHHCCHHHHHHHHHCCCCCCHHHEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
ASYRLTEAVTATLNVNNIFDEKYYSSIGAIGYYGEPRNAMLSVKASF
HHHHHHHHEEEEEECCHHHHHHHHHHHCCEEECCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8392140 [H]