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The map label for this gene is lsrB [H]

Identifier: 83592672

GI number: 83592672

Start: 1572476

End: 1573477

Strand: Direct

Name: lsrB [H]

Synonym: Rru_A1336

Alternate gene names: 83592672

Gene position: 1572476-1573477 (Clockwise)

Preceding gene: 83592671

Following gene: 83592673

Centisome position: 36.13

GC content: 61.38

Gene sequence:

>1002_bases
ATGTCCGCTTTTAAGAAAATAGCCGCCTGCGCCCTGGTTGTCGGGGGGGTGGGCGTGGCTGGTCCGCTCGCGGCCCAGGA
GTCGCCGACCATCGTCACCGTGGTCAAGGTGACCGGCGAAAACTGGTTCAAACGGATGGAAGAAGGCGTTGTCGCCTATG
ACAAGGAAAACGCCGACGTCAATGCCAGTCAGGTCGGTCCGGCCAAGGCCGATGCCGCCCAGCAGGGCCGGCTGATCGAA
GATCTCATCGCCAAGAAAGTCGACGCCATCGCCGTGGTGCCGATGGATCCCTCGGCGCTTGAAGGCGTGTTCAAGCGGGC
GATGAAGCGCGGCATCAAGGTGATCACCCATGAGGCCGACAATCTGAAGAACACCCAGGTCGATATCGAGGCCTTCGATA
ACACCGCCTTCGGCGCCCACTTCAACGAGCGCCTGTCCGAATGCATGGGTCATACGGGCAAGTGGACCTCTTTTGTCGGG
TCGCTGGGCAGCCTGACCCATGTGCAATGGGCCGATGGCGGCGCGGAATACGCCAAGCAGTTCCCGGGGATGGAGTTGGT
CTCGCCGAAGAACGAGTCCTTCAACGACGCCAATAAGGCCTATGACAAGGCCAAGGAATTGCTGCGCCGTTATCCCGACA
TCAAGGGCTTCCAGGGTGGGGCGGCGATCGACGTCATCGGCATCGGCCGGGCGGTCGAGGAAGCCGGTCTGAACGGCAAG
GTCTGCGTCGTCGGTCTGGGCCTGCCCCAGGACACCGGCCGCTATCTGGAAAGCGGCGCCGTGCAGAGCATCAGCTTCTG
GGATCCCAAGGACGCCGGGTTCGTCATGAACAAGGTGGCCAAGATGGTGATCGACGGCGTCGAATTCACCGAGGGCATGG
ATCTCGGCGTTCCGGGCTACAACAAGATCCACATCAAGAAGGGCCCGGGCGAGGGCGTCATCCTGGTCGGTCAGGCCTGG
GTCGATGTCGATAAGTCCAACTACAAGGACTATCCCTTCTAA

Upstream 100 bases:

>100_bases
CGCCAGGTACGGCCGCCCCGCCAAGCCGGCCTGAATGAGCGGCCGGTGAACGTTCGTGACTTTGGAACTTCAAAAGAATC
CGAGATGGAGGAAGAGATCA

Downstream 100 bases:

>100_bases
GGTCCTGTTAAGGCCCTTCTAAGGATCATGTCCGCTTAAGGATCCTCTTCCCCCAAGGATGCCTCTGTTTCGCGCGCCGT
TCTTCGAAGCGGCGCGCGAA

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSAFKKIAACALVVGGVGVAGPLAAQESPTIVTVVKVTGENWFKRMEEGVVAYDKENADVNASQVGPAKADAAQQGRLIE
DLIAKKVDAIAVVPMDPSALEGVFKRAMKRGIKVITHEADNLKNTQVDIEAFDNTAFGAHFNERLSECMGHTGKWTSFVG
SLGSLTHVQWADGGAEYAKQFPGMELVSPKNESFNDANKAYDKAKELLRRYPDIKGFQGGAAIDVIGIGRAVEEAGLNGK
VCVVGLGLPQDTGRYLESGAVQSISFWDPKDAGFVMNKVAKMVIDGVEFTEGMDLGVPGYNKIHIKKGPGEGVILVGQAW
VDVDKSNYKDYPF

Sequences:

>Translated_333_residues
MSAFKKIAACALVVGGVGVAGPLAAQESPTIVTVVKVTGENWFKRMEEGVVAYDKENADVNASQVGPAKADAAQQGRLIE
DLIAKKVDAIAVVPMDPSALEGVFKRAMKRGIKVITHEADNLKNTQVDIEAFDNTAFGAHFNERLSECMGHTGKWTSFVG
SLGSLTHVQWADGGAEYAKQFPGMELVSPKNESFNDANKAYDKAKELLRRYPDIKGFQGGAAIDVIGIGRAVEEAGLNGK
VCVVGLGLPQDTGRYLESGAVQSISFWDPKDAGFVMNKVAKMVIDGVEFTEGMDLGVPGYNKIHIKKGPGEGVILVGQAW
VDVDKSNYKDYPF
>Mature_332_residues
SAFKKIAACALVVGGVGVAGPLAAQESPTIVTVVKVTGENWFKRMEEGVVAYDKENADVNASQVGPAKADAAQQGRLIED
LIAKKVDAIAVVPMDPSALEGVFKRAMKRGIKVITHEADNLKNTQVDIEAFDNTAFGAHFNERLSECMGHTGKWTSFVGS
LGSLTHVQWADGGAEYAKQFPGMELVSPKNESFNDANKAYDKAKELLRRYPDIKGFQGGAAIDVIGIGRAVEEAGLNGKV
CVVGLGLPQDTGRYLESGAVQSISFWDPKDAGFVMNKVAKMVIDGVEFTEGMDLGVPGYNKIHIKKGPGEGVILVGQAWV
DVDKSNYKDYPF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=349, Percent_Identity=24.9283667621776, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790526, Length=216, Percent_Identity=30.5555555555556, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35657; Mature: 35526

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFKKIAACALVVGGVGVAGPLAAQESPTIVTVVKVTGENWFKRMEEGVVAYDKENADV
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHCCCEEEECCCCCC
NASQVGPAKADAAQQGRLIEDLIAKKVDAIAVVPMDPSALEGVFKRAMKRGIKVITHEAD
CHHHCCCCHHHHHHCCCHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCC
NLKNTQVDIEAFDNTAFGAHFNERLSECMGHTGKWTSFVGSLGSLTHVQWADGGAEYAKQ
CCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCHHHHHHH
FPGMELVSPKNESFNDANKAYDKAKELLRRYPDIKGFQGGAAIDVIGIGRAVEEAGLNGK
CCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHCCCCCC
VCVVGLGLPQDTGRYLESGAVQSISFWDPKDAGFVMNKVAKMVIDGVEFTEGMDLGVPGY
EEEEECCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCCC
NKIHIKKGPGEGVILVGQAWVDVDKSNYKDYPF
CEEEEEECCCCCEEEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
SAFKKIAACALVVGGVGVAGPLAAQESPTIVTVVKVTGENWFKRMEEGVVAYDKENADV
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHCCCEEEECCCCCC
NASQVGPAKADAAQQGRLIEDLIAKKVDAIAVVPMDPSALEGVFKRAMKRGIKVITHEAD
CHHHCCCCHHHHHHCCCHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCC
NLKNTQVDIEAFDNTAFGAHFNERLSECMGHTGKWTSFVGSLGSLTHVQWADGGAEYAKQ
CCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCHHHHHHH
FPGMELVSPKNESFNDANKAYDKAKELLRRYPDIKGFQGGAAIDVIGIGRAVEEAGLNGK
CCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHCCCCCC
VCVVGLGLPQDTGRYLESGAVQSISFWDPKDAGFVMNKVAKMVIDGVEFTEGMDLGVPGY
EEEEECCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCCC
NKIHIKKGPGEGVILVGQAWVDVDKSNYKDYPF
CEEEEEECCCCCEEEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA