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The map label for this gene is rbsC [H]

Identifier: 83592671

GI number: 83592671

Start: 1571352

End: 1572413

Strand: Direct

Name: rbsC [H]

Synonym: Rru_A1335

Alternate gene names: 83592671

Gene position: 1571352-1572413 (Clockwise)

Preceding gene: 83592669

Following gene: 83592672

Centisome position: 36.1

GC content: 63.84

Gene sequence:

>1062_bases
ATGTCGGATCGTCAGCTCAACTTCCTGATCCTTGTCAATCTGTCGGTGCTGGTCGCCGCCGTCGCCCTGGCCGGTCCCAC
CTTCGTCAATACCTATAATCTTCAGTCGATGGCGGCCCAGGTGCCCGAACTCGGGCTTTTGGCGATCGGCGTCATGCTTG
CCATGGTTTCGGGCAATGGCGGCATCGATCTGTCGGGCATCGCCCTGGCCAATTTGTCGGGGATTGTCGCGGCGATCGTT
GTTCCCCACTGGGTTTCGCCCGACGCCGCGCCGATGGCTTTTACCCTGTCCTTCGCCGCCGTTGCCCTGGCCGTCGGCCT
GATCGGCGGCCTGATCAACGGCCTGTTGATTTCGCGGGCCGAACTGACGCCGATCATCGCCACCTTGGGAACCCAGCTCG
CCTTTACCGGCGTGGCGATCGTGCTGACCAACGGGTCGGCGCTCGGCTTGGGCTATATCGAGCCGCTCGATGATTTCGGC
AATGCGCCGGTTTTTGGCGTGCCGATCTGTTTTGCCTTGTTCATCGTCATCGCCGCGGTGATCGGCGTCGTTCTGCGCTT
CACGCCCTTTGGCATGCGGCTGTTCCTGCTGGGCAGTAACGCCAAGGCGGCGCGCTATGCCGGCATCAACCTGCGGCGGA
TGATCCTGGTCACCTATACGCTCTGCGGCGTTCTCGCCTCGGTCGCCGGCATCATCATCGGCGCCCGCACCTCGAGCATG
AAATGGGACTACGGCAGTTCCTACGTGATGATCGCCATCCTGATCGCCGTCATGGCCGGGGTGCGCCCCGACGGCGGCTA
TGGGCGGGTGATCTGCGTCGTGTTGTCGGCGACGGCCCTGCAGGCGCTGAGCAGCATGTTCAATTTTCTCAATATCTCGA
ACTTTTTCCGCGACTGCGCCTGGGGTCTGCTTTTGCTGATTTTCCTCGCGGTGTCCCGGGTCGATCTCCGTTCCTGGTTG
CCGCGCCGGGATCGGGAGGCGGGGTCCGCCCCCTCCAGGCCGCTTCCTGGCGCGCAATGCCCGGCGCCAGGTACGGCCGC
CCCGCCAAGCCGGCCTGAATGA

Upstream 100 bases:

>100_bases
GGGCCCATTCCTCCCGTCTGGCCGCGATCGCCGGCGCAAGCGCCGCCGCCGTCGTCTTCTCCGGTCACGGGGTCCCTCGG
TGAAGGCGGTGAAGAACGCG

Downstream 100 bases:

>100_bases
GCGGCCGGTGAACGTTCGTGACTTTGGAACTTCAAAAGAATCCGAGATGGAGGAAGAGATCAATGTCCGCTTTTAAGAAA
ATAGCCGCCTGCGCCCTGGT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MSDRQLNFLILVNLSVLVAAVALAGPTFVNTYNLQSMAAQVPELGLLAIGVMLAMVSGNGGIDLSGIALANLSGIVAAIV
VPHWVSPDAAPMAFTLSFAAVALAVGLIGGLINGLLISRAELTPIIATLGTQLAFTGVAIVLTNGSALGLGYIEPLDDFG
NAPVFGVPICFALFIVIAAVIGVVLRFTPFGMRLFLLGSNAKAARYAGINLRRMILVTYTLCGVLASVAGIIIGARTSSM
KWDYGSSYVMIAILIAVMAGVRPDGGYGRVICVVLSATALQALSSMFNFLNISNFFRDCAWGLLLLIFLAVSRVDLRSWL
PRRDREAGSAPSRPLPGAQCPAPGTAAPPSRPE

Sequences:

>Translated_353_residues
MSDRQLNFLILVNLSVLVAAVALAGPTFVNTYNLQSMAAQVPELGLLAIGVMLAMVSGNGGIDLSGIALANLSGIVAAIV
VPHWVSPDAAPMAFTLSFAAVALAVGLIGGLINGLLISRAELTPIIATLGTQLAFTGVAIVLTNGSALGLGYIEPLDDFG
NAPVFGVPICFALFIVIAAVIGVVLRFTPFGMRLFLLGSNAKAARYAGINLRRMILVTYTLCGVLASVAGIIIGARTSSM
KWDYGSSYVMIAILIAVMAGVRPDGGYGRVICVVLSATALQALSSMFNFLNISNFFRDCAWGLLLLIFLAVSRVDLRSWL
PRRDREAGSAPSRPLPGAQCPAPGTAAPPSRPE
>Mature_352_residues
SDRQLNFLILVNLSVLVAAVALAGPTFVNTYNLQSMAAQVPELGLLAIGVMLAMVSGNGGIDLSGIALANLSGIVAAIVV
PHWVSPDAAPMAFTLSFAAVALAVGLIGGLINGLLISRAELTPIIATLGTQLAFTGVAIVLTNGSALGLGYIEPLDDFGN
APVFGVPICFALFIVIAAVIGVVLRFTPFGMRLFLLGSNAKAARYAGINLRRMILVTYTLCGVLASVAGIIIGARTSSMK
WDYGSSYVMIAILIAVMAGVRPDGGYGRVICVVLSATALQALSSMFNFLNISNFFRDCAWGLLLLIFLAVSRVDLRSWLP
RRDREAGSAPSRPLPGAQCPAPGTAAPPSRPE

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=290, Percent_Identity=32.4137931034483, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI145693152, Length=313, Percent_Identity=27.4760383386581, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1790524, Length=313, Percent_Identity=27.4760383386581, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787794, Length=235, Percent_Identity=26.8085106382979, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=25.8675078864353, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788471, Length=268, Percent_Identity=29.4776119402985, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787793, Length=314, Percent_Identity=28.6624203821656, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082395, Length=333, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36733; Mature: 36602

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRQLNFLILVNLSVLVAAVALAGPTFVNTYNLQSMAAQVPELGLLAIGVMLAMVSGNG
CCCCCEEEEEEHHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHHCCCC
GIDLSGIALANLSGIVAAIVVPHWVSPDAAPMAFTLSFAAVALAVGLIGGLINGLLISRA
CCEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELTPIIATLGTQLAFTGVAIVLTNGSALGLGYIEPLDDFGNAPVFGVPICFALFIVIAAV
HHHHHHHHHHHHHHHCCEEEEEECCCEECCCCCCCHHHCCCCCEEHHHHHHHHHHHHHHH
IGVVLRFTPFGMRLFLLGSNAKAARYAGINLRRMILVTYTLCGVLASVAGIIIGARTSSM
HHHHHHHCCCCEEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
KWDYGSSYVMIAILIAVMAGVRPDGGYGRVICVVLSATALQALSSMFNFLNISNFFRDCA
CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGLLLLIFLAVSRVDLRSWLPRRDREAGSAPSRPLPGAQCPAPGTAAPPSRPE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDRQLNFLILVNLSVLVAAVALAGPTFVNTYNLQSMAAQVPELGLLAIGVMLAMVSGNG
CCCCEEEEEEHHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHHCCCC
GIDLSGIALANLSGIVAAIVVPHWVSPDAAPMAFTLSFAAVALAVGLIGGLINGLLISRA
CCEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELTPIIATLGTQLAFTGVAIVLTNGSALGLGYIEPLDDFGNAPVFGVPICFALFIVIAAV
HHHHHHHHHHHHHHHCCEEEEEECCCEECCCCCCCHHHCCCCCEEHHHHHHHHHHHHHHH
IGVVLRFTPFGMRLFLLGSNAKAARYAGINLRRMILVTYTLCGVLASVAGIIIGARTSSM
HHHHHHHCCCCEEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
KWDYGSSYVMIAILIAVMAGVRPDGGYGRVICVVLSATALQALSSMFNFLNISNFFRDCA
CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGLLLLIFLAVSRVDLRSWLPRRDREAGSAPSRPLPGAQCPAPGTAAPPSRPE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]