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The map label for this gene is fadE25 [H]

Identifier: 83592644

GI number: 83592644

Start: 1542228

End: 1544018

Strand: Reverse

Name: fadE25 [H]

Synonym: Rru_A1308

Alternate gene names: 83592644

Gene position: 1544018-1542228 (Counterclockwise)

Preceding gene: 83592645

Following gene: 83592643

Centisome position: 35.47

GC content: 67.0

Gene sequence:

>1791_bases
ATGGCCGGATACAAGGCTCCCCTGCGCGACATGCGCTATGTGCTTTACGACTTGTTCGATGGCGCGTCGCTGACCACCCT
TCCCGGGTACGAGGAGTTCACCGCCGATCTGATCGATCCGGTGCTCGAAGAAGCCGCCAAGATTTGCGAAGACGTCCTCC
AGCCGCTCAACCGCCCCGGCGACGAGGAGGGCTGCGTTCTGGAAAACGGCGTCGTCCGTACCCCCAAGGGCTTCCCCGAG
GCTTACCGGACCTTCCGCGAGGGCGGCTGGACCTCGATCACCTGCGATCCCGCCCACGGCGGCCAGGGCCTGCCCCAGGT
GGTCAACACCTTCATCGAAGAGATGATCTGCGCCGCCAATCTGTCGTTTGGCATGTATCCCGGGCTGTCGCATGGCGCCT
ATGTGGCGCTCAAGCAGTTCGGCACCGAAGATCAGAAGGCCCGTTATCTGCCGGCCCTGGTCGATGGCACCTGGACGGGC
ACCATGTGCCTGACCGAACCCCAGTGCGGAACCGACCTGGGGCTGTTGCGCACCAAGGCGGTGCCCGATGGCGAGGGCGG
CTATAAGATCACCGGCACCAAGATCTTCATCTCGGCGGGCGATCACGACCTGACCGAGAATATCCTGCATCTGGTGCTGG
CCCGCCTGCCCGACGCCCCCAAGGGCATCAAGGGCATCAGCCTGTTCCTGGTGCCCAAGGTCCTGGTTACCGAGGAAGGC
GCCCTTGGCGACCGCAACGCCGTGACCTGCGGCGCCCTCGAACACAAGATGGGGATCAAGGCGTCGTCGACCTGCGTGCT
CAATTTCGACGAGGCGACGGGCTGGCTGATCGGCGAGCCGCATAAGGGCATGCGGGCGATGTTCGCCATGATGAACACCG
CCCGCCTGGGCGTCGGCGTTCAGGGTCTGGGGCTGGCCGAGGCGTCTTATCAGGGCGCCGTGGCCTATGCCCGCGACCGC
CTGCAGGGCCGCTCGCCCAGCGGCGTCAAGGCGCCCGACAAGCCCGCCGATCCGCTGATCGTCCATCCCGACGTGCGGCG
GATGCTGCTCACCCAGCGCGCCATCGTCGAAGGCGGACGGGCCCTGGCCGCCTGGGTCGGTCTGGCCCTTGATCGCCAGC
ACCACGCCGGCGATCCCGCCACCCGCGCCGAGGCCGGCGAATTCGTCGCCCTGATGACCCCGGTGGTCAAGGCGCTGCTC
ACCGATCTGGGCAGCGAGGCGACCAATCTGGGCGTTCAGGTCTTTGGCGGCCATGGCTACATCCGCGAGCACGGCATGGA
GCAATATATCCGCGACTGCCGGATCACCCAGATCTACGAGGGCACCAACGGCATCCAGGCCCTGGATCTGGTGGGGCGCA
AATTGCCCGAGAACGCCGGGCGCAACCTGCGGCGCTTCTTCCATCCGGTCGCCGATTACATCGAGGCCCGCCTTGATGAC
GACACCCTGGCCGAATTCGTCGGACCGCTGGCCAAGACCTTCGTCCGCCTCCAGCAGGCCACGGCCCAGGTGGCGCGCGT
CGGTATGACCAAACCCGCCGAAGCCGCCGCCGCCGCCACCGATTACCAGCGCCTGCTTGGCTTTACCGCGCTGGCCTATC
TTTGGGCGCGCATGGCCGAGCTATCGCTGCCCAAGGCCGGCACCGCCGAGGATAACGACGCCTTCCACAGCGCCAAGGTG
GCGACGGCCCGCGTGTTCATGGAACGCCTGCTGCCCCAGACCAGCGGCCTGTTCGCCACCATCATGGCCGGCGGCCGCAG
CCTGGAGGCCTTCCCCGACGCCGCCTTCTGA

Upstream 100 bases:

>100_bases
CCCGGCGGCCGGAAACCCTGGCCCGCATCGAGACCATGCTGCTCACCGGCAAGCCCTTGCGCAACTAGCATCCCGTCCCG
ATCCAAGAAGGAGAAATCCC

Downstream 100 bases:

>100_bases
TCCCCCGCCCCCTTAAGGTCCGGGCCTCCTCGCCGGCCCGGACCCCCCCTCCCCGCTTCGAGAAAAAAGCCGATGAACCT
GTGGCTGAGACTCATCAAGG

Product: acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 596; Mature: 595

Protein sequence:

>596_residues
MAGYKAPLRDMRYVLYDLFDGASLTTLPGYEEFTADLIDPVLEEAAKICEDVLQPLNRPGDEEGCVLENGVVRTPKGFPE
AYRTFREGGWTSITCDPAHGGQGLPQVVNTFIEEMICAANLSFGMYPGLSHGAYVALKQFGTEDQKARYLPALVDGTWTG
TMCLTEPQCGTDLGLLRTKAVPDGEGGYKITGTKIFISAGDHDLTENILHLVLARLPDAPKGIKGISLFLVPKVLVTEEG
ALGDRNAVTCGALEHKMGIKASSTCVLNFDEATGWLIGEPHKGMRAMFAMMNTARLGVGVQGLGLAEASYQGAVAYARDR
LQGRSPSGVKAPDKPADPLIVHPDVRRMLLTQRAIVEGGRALAAWVGLALDRQHHAGDPATRAEAGEFVALMTPVVKALL
TDLGSEATNLGVQVFGGHGYIREHGMEQYIRDCRITQIYEGTNGIQALDLVGRKLPENAGRNLRRFFHPVADYIEARLDD
DTLAEFVGPLAKTFVRLQQATAQVARVGMTKPAEAAAAATDYQRLLGFTALAYLWARMAELSLPKAGTAEDNDAFHSAKV
ATARVFMERLLPQTSGLFATIMAGGRSLEAFPDAAF

Sequences:

>Translated_596_residues
MAGYKAPLRDMRYVLYDLFDGASLTTLPGYEEFTADLIDPVLEEAAKICEDVLQPLNRPGDEEGCVLENGVVRTPKGFPE
AYRTFREGGWTSITCDPAHGGQGLPQVVNTFIEEMICAANLSFGMYPGLSHGAYVALKQFGTEDQKARYLPALVDGTWTG
TMCLTEPQCGTDLGLLRTKAVPDGEGGYKITGTKIFISAGDHDLTENILHLVLARLPDAPKGIKGISLFLVPKVLVTEEG
ALGDRNAVTCGALEHKMGIKASSTCVLNFDEATGWLIGEPHKGMRAMFAMMNTARLGVGVQGLGLAEASYQGAVAYARDR
LQGRSPSGVKAPDKPADPLIVHPDVRRMLLTQRAIVEGGRALAAWVGLALDRQHHAGDPATRAEAGEFVALMTPVVKALL
TDLGSEATNLGVQVFGGHGYIREHGMEQYIRDCRITQIYEGTNGIQALDLVGRKLPENAGRNLRRFFHPVADYIEARLDD
DTLAEFVGPLAKTFVRLQQATAQVARVGMTKPAEAAAAATDYQRLLGFTALAYLWARMAELSLPKAGTAEDNDAFHSAKV
ATARVFMERLLPQTSGLFATIMAGGRSLEAFPDAAF
>Mature_595_residues
AGYKAPLRDMRYVLYDLFDGASLTTLPGYEEFTADLIDPVLEEAAKICEDVLQPLNRPGDEEGCVLENGVVRTPKGFPEA
YRTFREGGWTSITCDPAHGGQGLPQVVNTFIEEMICAANLSFGMYPGLSHGAYVALKQFGTEDQKARYLPALVDGTWTGT
MCLTEPQCGTDLGLLRTKAVPDGEGGYKITGTKIFISAGDHDLTENILHLVLARLPDAPKGIKGISLFLVPKVLVTEEGA
LGDRNAVTCGALEHKMGIKASSTCVLNFDEATGWLIGEPHKGMRAMFAMMNTARLGVGVQGLGLAEASYQGAVAYARDRL
QGRSPSGVKAPDKPADPLIVHPDVRRMLLTQRAIVEGGRALAAWVGLALDRQHHAGDPATRAEAGEFVALMTPVVKALLT
DLGSEATNLGVQVFGGHGYIREHGMEQYIRDCRITQIYEGTNGIQALDLVGRKLPENAGRNLRRFFHPVADYIEARLDDD
TLAEFVGPLAKTFVRLQQATAQVARVGMTKPAEAAAAATDYQRLLGFTALAYLWARMAELSLPKAGTAEDNDAFHSAKVA
TARVFMERLLPQTSGLFATIMAGGRSLEAFPDAAF

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=373, Percent_Identity=27.0777479892761, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI4557235, Length=423, Percent_Identity=26.241134751773, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI76496475, Length=423, Percent_Identity=26.241134751773, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI4557233, Length=360, Percent_Identity=27.2222222222222, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI21361497, Length=356, Percent_Identity=26.9662921348315, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI7656849, Length=361, Percent_Identity=27.7008310249307, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI226958412, Length=383, Percent_Identity=25.8485639686684, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI226958414, Length=383, Percent_Identity=26.1096605744125, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI4501857, Length=336, Percent_Identity=26.1904761904762, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI4557231, Length=323, Percent_Identity=26.3157894736842, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI187960098, Length=324, Percent_Identity=26.8518518518519, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI87082384, Length=351, Percent_Identity=27.0655270655271, Blast_Score=105, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17508101, Length=402, Percent_Identity=28.8557213930348, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17506239, Length=404, Percent_Identity=26.2376237623762, Blast_Score=114, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17533517, Length=422, Percent_Identity=27.7251184834123, Blast_Score=114, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17534899, Length=437, Percent_Identity=26.3157894736842, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17569725, Length=432, Percent_Identity=27.0833333333333, Blast_Score=106, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71990804, Length=254, Percent_Identity=31.8897637795276, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71985184, Length=420, Percent_Identity=26.4285714285714, Blast_Score=100, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17570075, Length=369, Percent_Identity=26.2872628726287, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI86563383, Length=301, Percent_Identity=30.5647840531561, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI86563381, Length=301, Percent_Identity=30.5647840531561, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17538396, Length=384, Percent_Identity=25, Blast_Score=89, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI32563615, Length=186, Percent_Identity=31.7204301075269, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71985192, Length=279, Percent_Identity=29.0322580645161, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17534353, Length=325, Percent_Identity=24.9230769230769, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71982178, Length=240, Percent_Identity=25.8333333333333, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21356377, Length=387, Percent_Identity=29.1989664082687, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24666513, Length=429, Percent_Identity=25.8741258741259, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24646207, Length=382, Percent_Identity=26.9633507853403, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI281363737, Length=342, Percent_Identity=26.9005847953216, Blast_Score=97, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24660351, Length=328, Percent_Identity=28.3536585365854, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21355753, Length=379, Percent_Identity=25.065963060686, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI19920834, Length=330, Percent_Identity=26.3636363636364, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 64214; Mature: 64083

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGYKAPLRDMRYVLYDLFDGASLTTLPGYEEFTADLIDPVLEEAAKICEDVLQPLNRPG
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DEEGCVLENGVVRTPKGFPEAYRTFREGGWTSITCDPAHGGQGLPQVVNTFIEEMICAAN
CCCCCEECCCEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
LSFGMYPGLSHGAYVALKQFGTEDQKARYLPALVDGTWTGTMCLTEPQCGTDLGLLRTKA
CCCCCCCCCCCCHHHHHHHHCCCCHHHHCCHHHCCCCCCCEEEEECCCCCCCHHHHEECC
VPDGEGGYKITGTKIFISAGDHDLTENILHLVLARLPDAPKGIKGISLFLVPKVLVTEEG
CCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEHEEECHHEEECCC
ALGDRNAVTCGALEHKMGIKASSTCVLNFDEATGWLIGEPHKGMRAMFAMMNTARLGVGV
CCCCCCCEEECHHHHHCCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHCCCC
QGLGLAEASYQGAVAYARDRLQGRSPSGVKAPDKPADPLIVHPDVRRMLLTQRAIVEGGR
CCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCH
ALAAWVGLALDRQHHAGDPATRAEAGEFVALMTPVVKALLTDLGSEATNLGVQVFGGHGY
HHHHHHHHHHCCHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCH
IREHGMEQYIRDCRITQIYEGTNGIQALDLVGRKLPENAGRNLRRFFHPVADYIEARLDD
HHHCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHCCH
DTLAEFVGPLAKTFVRLQQATAQVARVGMTKPAEAAAAATDYQRLLGFTALAYLWARMAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLPKAGTAEDNDAFHSAKVATARVFMERLLPQTSGLFATIMAGGRSLEAFPDAAF
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AGYKAPLRDMRYVLYDLFDGASLTTLPGYEEFTADLIDPVLEEAAKICEDVLQPLNRPG
CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DEEGCVLENGVVRTPKGFPEAYRTFREGGWTSITCDPAHGGQGLPQVVNTFIEEMICAAN
CCCCCEECCCEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
LSFGMYPGLSHGAYVALKQFGTEDQKARYLPALVDGTWTGTMCLTEPQCGTDLGLLRTKA
CCCCCCCCCCCCHHHHHHHHCCCCHHHHCCHHHCCCCCCCEEEEECCCCCCCHHHHEECC
VPDGEGGYKITGTKIFISAGDHDLTENILHLVLARLPDAPKGIKGISLFLVPKVLVTEEG
CCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEHEEECHHEEECCC
ALGDRNAVTCGALEHKMGIKASSTCVLNFDEATGWLIGEPHKGMRAMFAMMNTARLGVGV
CCCCCCCEEECHHHHHCCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHCCCC
QGLGLAEASYQGAVAYARDRLQGRSPSGVKAPDKPADPLIVHPDVRRMLLTQRAIVEGGR
CCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCH
ALAAWVGLALDRQHHAGDPATRAEAGEFVALMTPVVKALLTDLGSEATNLGVQVFGGHGY
HHHHHHHHHHCCHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCH
IREHGMEQYIRDCRITQIYEGTNGIQALDLVGRKLPENAGRNLRRFFHPVADYIEARLDD
HHHCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHCCH
DTLAEFVGPLAKTFVRLQQATAQVARVGMTKPAEAAAAATDYQRLLGFTALAYLWARMAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLPKAGTAEDNDAFHSAKVATARVFMERLLPQTSGLFATIMAGGRSLEAFPDAAF
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]