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The map label for this gene is ugpA [C]

Identifier: 83592597

GI number: 83592597

Start: 1482167

End: 1483063

Strand: Reverse

Name: ugpA [C]

Synonym: Rru_A1261

Alternate gene names: 83592597

Gene position: 1483063-1482167 (Counterclockwise)

Preceding gene: 83592598

Following gene: 83592596

Centisome position: 34.07

GC content: 63.55

Gene sequence:

>897_bases
GTGAGCGGGGCGGCGGATCGTCCGATGACGGCTCTCGAACGGGCGGACCGCCGTTTCGGCTGGTTCCTCACCCTTCCCGG
CGTGCTTATGCTGGCGGCCACCATCGCCTTTCCGCTGCTGTGGGCGGTGGCGACCAGCCTGTTTGATTTCACGCTGATCG
CCCCCACCTACGACACCTTCGTCGGCCTTGATAATTACGCCTTGGCCCTGGGCAACACGGAATTCCTCCACGCCTCGTGG
CTGACCGTCGGCTTCGTTGTCGCCGTCGTTCTCATCGAATTCGCCATCGGCTTTCTCATCGCCCTGATGCTCAACGGCGT
GCGGCGGGGCAAGCCGATCTATTACGCCATCTTGTTATGCCCCTTGCTGATCAATCCGGTGGTGGTCGGTCTGGTCTGGC
GCATGGTTCTCCACCCCACGCTGGGGGTGGCCAATTACGCCCTCGGCCTGATCGGCCTTTCCCCGGTCAATTGGCTGGGC
GATGTGACCGTCGCCTTCTGGACCCTGGTCGGCGTCGATATCTGGCATCAGGTCTCGTTCATGATCGTCCTGCTGCTCGC
CGGCCTCTCGGCCCTGCCGGCCGAACCCTATGAGGCGGCCCGCGTCGATGGCGCCAGCGTCTTCCAGCGCTTCTGGCACA
TCACCTTGCCGCTGATGCGCCGGGTGATCCTGGTCACCTTGCTGATCCGCATGATCTTCGCCGTCAAAACCTATGACCTC
GTCTACATCATGACCCGGGGCGGCCCGGGCACGGCCACCGATCTGGTCAGCTATTCGATCTACCGCACCGCCTTCGTCGG
CCTCAACCTTGGTCAGGCGACGGCAATGGCCGGCTTGCTGCTGATCCCGGTTCTGGGGATCACCGCCTATCTCTACCGGC
TGATGCGCAAGGCCTGA

Upstream 100 bases:

>100_bases
AACTGTCACTGGCCGTCGCCAAGGAAAAGACCTCCGAAGCCGCCTTGGCGACCGTCGCCAGCGAATTCGACGCCCTCGCC
CTCAAGGACGGGAAGCAAAA

Downstream 100 bases:

>100_bases
CGGGTCCCGTGTTCGCCGGGCGATTCTTTGCACCATTTGCCCGGCGCGGGCGCCTGCGTGTCGCGCCCGGGCCCTGGGAG
GGACCATGGCATCCATAGAC

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSGAADRPMTALERADRRFGWFLTLPGVLMLAATIAFPLLWAVATSLFDFTLIAPTYDTFVGLDNYALALGNTEFLHASW
LTVGFVVAVVLIEFAIGFLIALMLNGVRRGKPIYYAILLCPLLINPVVVGLVWRMVLHPTLGVANYALGLIGLSPVNWLG
DVTVAFWTLVGVDIWHQVSFMIVLLLAGLSALPAEPYEAARVDGASVFQRFWHITLPLMRRVILVTLLIRMIFAVKTYDL
VYIMTRGGPGTATDLVSYSIYRTAFVGLNLGQATAMAGLLLIPVLGITAYLYRLMRKA

Sequences:

>Translated_298_residues
MSGAADRPMTALERADRRFGWFLTLPGVLMLAATIAFPLLWAVATSLFDFTLIAPTYDTFVGLDNYALALGNTEFLHASW
LTVGFVVAVVLIEFAIGFLIALMLNGVRRGKPIYYAILLCPLLINPVVVGLVWRMVLHPTLGVANYALGLIGLSPVNWLG
DVTVAFWTLVGVDIWHQVSFMIVLLLAGLSALPAEPYEAARVDGASVFQRFWHITLPLMRRVILVTLLIRMIFAVKTYDL
VYIMTRGGPGTATDLVSYSIYRTAFVGLNLGQATAMAGLLLIPVLGITAYLYRLMRKA
>Mature_297_residues
SGAADRPMTALERADRRFGWFLTLPGVLMLAATIAFPLLWAVATSLFDFTLIAPTYDTFVGLDNYALALGNTEFLHASWL
TVGFVVAVVLIEFAIGFLIALMLNGVRRGKPIYYAILLCPLLINPVVVGLVWRMVLHPTLGVANYALGLIGLSPVNWLGD
VTVAFWTLVGVDIWHQVSFMIVLLLAGLSALPAEPYEAARVDGASVFQRFWHITLPLMRRVILVTLLIRMIFAVKTYDLV
YIMTRGGPGTATDLVSYSIYRTAFVGLNLGQATAMAGLLLIPVLGITAYLYRLMRKA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=242, Percent_Identity=28.099173553719, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787570, Length=278, Percent_Identity=26.978417266187, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790465, Length=248, Percent_Identity=29.4354838709677, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32713; Mature: 32581

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAADRPMTALERADRRFGWFLTLPGVLMLAATIAFPLLWAVATSLFDFTLIAPTYDTF
CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VGLDNYALALGNTEFLHASWLTVGFVVAVVLIEFAIGFLIALMLNGVRRGKPIYYAILLC
HCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
PLLINPVVVGLVWRMVLHPTLGVANYALGLIGLSPVNWLGDVTVAFWTLVGVDIWHQVSF
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MIVLLLAGLSALPAEPYEAARVDGASVFQRFWHITLPLMRRVILVTLLIRMIFAVKTYDL
HHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
VYIMTRGGPGTATDLVSYSIYRTAFVGLNLGQATAMAGLLLIPVLGITAYLYRLMRKA
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGAADRPMTALERADRRFGWFLTLPGVLMLAATIAFPLLWAVATSLFDFTLIAPTYDTF
CCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VGLDNYALALGNTEFLHASWLTVGFVVAVVLIEFAIGFLIALMLNGVRRGKPIYYAILLC
HCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
PLLINPVVVGLVWRMVLHPTLGVANYALGLIGLSPVNWLGDVTVAFWTLVGVDIWHQVSF
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MIVLLLAGLSALPAEPYEAARVDGASVFQRFWHITLPLMRRVILVTLLIRMIFAVKTYDL
HHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
VYIMTRGGPGTATDLVSYSIYRTAFVGLNLGQATAMAGLLLIPVLGITAYLYRLMRKA
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]