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The map label for this gene is atpH

Identifier: 83592559

GI number: 83592559

Start: 1444641

End: 1445201

Strand: Direct

Name: atpH

Synonym: Rru_A1223

Alternate gene names: 83592559

Gene position: 1444641-1445201 (Clockwise)

Preceding gene: 83592558

Following gene: 83592560

Centisome position: 33.19

GC content: 62.57

Gene sequence:

>561_bases
GTGTCATCCCATAAGGCAGGAGTAACGGGAGTTGCCGAGCGCTACGCGACGGCACTCTATGAGCTGGCGGAAGATCGTGG
GGCACTCGATCAGGTGTCCGCGGACCTTCGCTCGTTGAAAGCCATGCTCGACGAAAGCGGTGACCTGCGCCGCGTGATCG
CGAGTCCCGTCATCGGTCGTGACGACCAGCGCAAGGCATTGACCGCGCTGGCCGAAAAGGCCGGTTTTCATGAAATCGTC
CGTAATTTTCTGGGCGTGGTCGCGGCGAAGCATCGTTCCTTCGCCGTCCCCGGCATGATCGGCGCGTTCCTTGAACGCCT
CGCCGCCCGCCGGGGCGAAGTCACCGCCCGGATCGTCAGCGCCACGGCCCTTACATCGGCCCAGAAAAGCGCCCTGACGA
CGGCTCTCAATAAAGCCACGGGGAATACGGTCACCATCGACGCCTCGGTGGATCCGGCCCTTCTGGGCGGGATGGTCGTG
CGCGTTGGATCGCGTATGGTCGACAGTTCCCTCAGCACAAAGCTCAAACGGTTGCAACTCGCCATGAAAGGGGTTGGGTG
A

Upstream 100 bases:

>100_bases
TGAGAGGCGTCCCTTTTCAGGGGCGCGTGATCTCGTCTATTCAATGACTTGCGCCGCTGCGGCGTGATTCGTTCGACCGC
TATACTTGGGGCTATCGCAC

Downstream 100 bases:

>100_bases
TGGAAATCCGCGCTGCGGAGATCTCCGCGATCCTCAAGGAGCAGATCGCGAATTTCGGAACCGAGGCCGAATCCGCCGAG
GTGGGTCAGGTCCTGTCGGT

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MSSHKAGVTGVAERYATALYELAEDRGALDQVSADLRSLKAMLDESGDLRRVIASPVIGRDDQRKALTALAEKAGFHEIV
RNFLGVVAAKHRSFAVPGMIGAFLERLAARRGEVTARIVSATALTSAQKSALTTALNKATGNTVTIDASVDPALLGGMVV
RVGSRMVDSSLSTKLKRLQLAMKGVG

Sequences:

>Translated_186_residues
MSSHKAGVTGVAERYATALYELAEDRGALDQVSADLRSLKAMLDESGDLRRVIASPVIGRDDQRKALTALAEKAGFHEIV
RNFLGVVAAKHRSFAVPGMIGAFLERLAARRGEVTARIVSATALTSAQKSALTTALNKATGNTVTIDASVDPALLGGMVV
RVGSRMVDSSLSTKLKRLQLAMKGVG
>Mature_185_residues
SSHKAGVTGVAERYATALYELAEDRGALDQVSADLRSLKAMLDESGDLRRVIASPVIGRDDQRKALTALAEKAGFHEIVR
NFLGVVAAKHRSFAVPGMIGAFLERLAARRGEVTARIVSATALTSAQKSALTTALNKATGNTVTIDASVDPALLGGMVVR
VGSRMVDSSLSTKLKRLQLAMKGVG

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Homo sapiens, GI4502303, Length=180, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71984710, Length=177, Percent_Identity=31.0734463276836, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71984717, Length=177, Percent_Identity=31.0734463276836, Blast_Score=106, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24647054, Length=171, Percent_Identity=37.4269005847953, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24647056, Length=113, Percent_Identity=36.283185840708, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_RHORT (Q2RV21)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_426311.1
- ProteinModelPortal:   Q2RV21
- SMR:   Q2RV21
- STRING:   Q2RV21
- GeneID:   3833721
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A1223
- NMPDR:   fig|1085.1.peg.3143
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   SIGDKYV
- PhylomeDB:   Q2RV21
- ProtClustDB:   PRK05758
- BioCyc:   RRUB269796:RRU_A1223-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19576; Mature: 19445

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHKAGVTGVAERYATALYELAEDRGALDQVSADLRSLKAMLDESGDLRRVIASPVIGR
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
DDQRKALTALAEKAGFHEIVRNFLGVVAAKHRSFAVPGMIGAFLERLAARRGEVTARIVS
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
ATALTSAQKSALTTALNKATGNTVTIDASVDPALLGGMVVRVGSRMVDSSLSTKLKRLQL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMKGVG
HHHCCC
>Mature Secondary Structure 
SSHKAGVTGVAERYATALYELAEDRGALDQVSADLRSLKAMLDESGDLRRVIASPVIGR
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
DDQRKALTALAEKAGFHEIVRNFLGVVAAKHRSFAVPGMIGAFLERLAARRGEVTARIVS
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
ATALTSAQKSALTTALNKATGNTVTIDASVDPALLGGMVVRVGSRMVDSSLSTKLKRLQL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMKGVG
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA