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The map label for this gene is hupD [H]

Identifier: 83592500

GI number: 83592500

Start: 1382080

End: 1382676

Strand: Direct

Name: hupD [H]

Synonym: Rru_A1164

Alternate gene names: 83592500

Gene position: 1382080-1382676 (Clockwise)

Preceding gene: 83592499

Following gene: 83592501

Centisome position: 31.75

GC content: 70.02

Gene sequence:

>597_bases
ATGAACATCCCCGGCGGGCTCCCCTTGGCAAGGGAGGAGGACGAGGAGGATTGCGCCGCCCTGGTGCTGGGCATCGGCAA
TCTGCTGTGGGCCGACGAGGGCTTTGGCGTGCGCTGCGTCGAAGAGATGCACGCCACCTGTGACCTAGCGCCCGGGGTGC
GGTTGCTCGATGGCGGCACCCAGGGGCTTTATCTGGTGGGCGCCATCGCCCGGGCGGCGCGGCTGATCGTTTTTGACGCC
ATCGATTATGGCGAGGCGCCGGGCACCCTGAAGGTGGTGTTCGGCGAGGAGGTCGCCGGTTTCATGGGCTGTCGCAAGAT
GAGCCTGCACCAGACCGGCTTTCAGGACGTGTTGGCGGCGGCCGATCTGCTGGGGCGCCGACCGCCGGTAATGGCGTTGA
TCGGCGTGCAGGCCGAAGCCCTGGACGACTGGGGCGGCCCTTTGCGCCCCGTCGTGCGGGCCCAGGTCGGCCCGGCCATC
GCCCAGGCCTGCGCCCTGCTTGCCGAGTGGGGGTTGGCCTGTCGGCCGCGCCCGGCGGCGCCGGCGGCCGGCCTGCTGGG
GTTCGGCCTGTCAAGCTCGGCCTATGAACAGCGTTAA

Upstream 100 bases:

>100_bases
TGCTTCATGTGTACGCGGCGATCCGCGAGGACATCATGAGCCGGCAATCGATGCTGTCGACGATGATCAGCGGGCGGCGC
ATGTTCAAGGATGACCGGCC

Downstream 100 bases:

>100_bases
GCGGGGAGGGAGGGGTTATGTGCATCGGATACCCCATGCGGATCGAGGCGCTTAATCCCGACGCCAGCTTCGGCTTGGCC
CGCCGGGCGCCGCGAGAACG

Product: HyaD peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MNIPGGLPLAREEDEEDCAALVLGIGNLLWADEGFGVRCVEEMHATCDLAPGVRLLDGGTQGLYLVGAIARAARLIVFDA
IDYGEAPGTLKVVFGEEVAGFMGCRKMSLHQTGFQDVLAAADLLGRRPPVMALIGVQAEALDDWGGPLRPVVRAQVGPAI
AQACALLAEWGLACRPRPAAPAAGLLGFGLSSSAYEQR

Sequences:

>Translated_198_residues
MNIPGGLPLAREEDEEDCAALVLGIGNLLWADEGFGVRCVEEMHATCDLAPGVRLLDGGTQGLYLVGAIARAARLIVFDA
IDYGEAPGTLKVVFGEEVAGFMGCRKMSLHQTGFQDVLAAADLLGRRPPVMALIGVQAEALDDWGGPLRPVVRAQVGPAI
AQACALLAEWGLACRPRPAAPAAGLLGFGLSSSAYEQR
>Mature_198_residues
MNIPGGLPLAREEDEEDCAALVLGIGNLLWADEGFGVRCVEEMHATCDLAPGVRLLDGGTQGLYLVGAIARAARLIVFDA
IDYGEAPGTLKVVFGEEVAGFMGCRKMSLHQTGFQDVLAAADLLGRRPPVMALIGVQAEALDDWGGPLRPVVRAQVGPAI
AQACALLAEWGLACRPRPAAPAAGLLGFGLSSSAYEQR

Specific function: Not known. Could be involved in the processing of hydrogenase [H]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1787209, Length=176, Percent_Identity=46.5909090909091, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1789367, Length=160, Percent_Identity=42.5, Blast_Score=107, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 20681; Mature: 20681

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPGGLPLAREEDEEDCAALVLGIGNLLWADEGFGVRCVEEMHATCDLAPGVRLLDGGT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCCCEEECCCC
QGLYLVGAIARAARLIVFDAIDYGEAPGTLKVVFGEEVAGFMGCRKMSLHQTGFQDVLAA
CHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHH
ADLLGRRPPVMALIGVQAEALDDWGGPLRPVVRAQVGPAIAQACALLAEWGLACRPRPAA
HHHHCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
PAAGLLGFGLSSSAYEQR
CCHHHHHCCCCCCHHCCC
>Mature Secondary Structure
MNIPGGLPLAREEDEEDCAALVLGIGNLLWADEGFGVRCVEEMHATCDLAPGVRLLDGGT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCCCEEECCCC
QGLYLVGAIARAARLIVFDAIDYGEAPGTLKVVFGEEVAGFMGCRKMSLHQTGFQDVLAA
CHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHH
ADLLGRRPPVMALIGVQAEALDDWGGPLRPVVRAQVGPAIAQACALLAEWGLACRPRPAA
HHHHCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
PAAGLLGFGLSSSAYEQR
CCHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Ni [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8230232; 8163174; 12597275 [H]