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The map label for this gene is hupZ [H]

Identifier: 83592499

GI number: 83592499

Start: 1381364

End: 1382083

Strand: Direct

Name: hupZ [H]

Synonym: Rru_A1163

Alternate gene names: 83592499

Gene position: 1381364-1382083 (Clockwise)

Preceding gene: 83592498

Following gene: 83592500

Centisome position: 31.73

GC content: 62.36

Gene sequence:

>720_bases
ATGAGCACCGTGACCGACGAAGCCGCGCCCGAGGTGATCCTGGGCACGACGCGCCACCCCTCGGTTTACATCTATGAGGC
GCCGGTACGCCTGTGGCACTGGCTGAACGCCGCCTGCATCGTCGTGCTGGCGGTGACGGGCTATCTGATCGGCAGTCCGC
CGCCGTCCCTGGCCGGCGACGCTGGCGGAGTGTTCCGCTTCGGCGCCCTGCGCTTCGCCCATTTCGCCGCCGGCCTGCTG
TTCGCCGGGGGATTCGTGTTCCGCGCCTATTGGGCCTTTGTCGGCAATCACTACGCCCGCCAGCTGTTCGTCCTGCCGTT
CTGGCGCGCGGTGTGGTGGCGCGAAATCTGGTTCGAATTGTCGTGGTACCTGTTCCTGCGCAAGGAACCCAAAAAGTACC
TGGGTCATAACCCTTTGGCTCATTTCATGATGTTCTTCCTGTTCACCCTGGTCGGCCTGTTCATGATCGTCTCGGGGATG
GCGCTGTACGCCGAAGGCCAGGGCCCGGGAAGTTGGACGCGGGGGCTGTTTGGCTGGGTGTTCTGGCTGTTTCCCAATAC
CCAGGATCTGCGCACGCTTCACCATTTGGGATTGTGGGTGATGGTCTGTTTCACCATGCTTCATGTGTACGCGGCGATCC
GCGAGGACATCATGAGCCGGCAATCGATGCTGTCGACGATGATCAGCGGGCGGCGCATGTTCAAGGATGACCGGCCATGA

Upstream 100 bases:

>100_bases
GCCTCGCCTGTTCGACCCATATCCTGACGCCCGAGGGCGGCGAGGCGATTTCGGTGACGGTGCGCTAACGCGTTTTCACG
CCAACGGGGAAGGAACGACC

Downstream 100 bases:

>100_bases
ACATCCCCGGCGGGCTCCCCTTGGCAAGGGAGGAGGACGAGGAGGATTGCGCCGCCCTGGTGCTGGGCATCGGCAATCTG
CTGTGGGCCGACGAGGGCTT

Product: nickel-dependent hydrogenase b-type cytochrome subunit

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSTVTDEAAPEVILGTTRHPSVYIYEAPVRLWHWLNAACIVVLAVTGYLIGSPPPSLAGDAGGVFRFGALRFAHFAAGLL
FAGGFVFRAYWAFVGNHYARQLFVLPFWRAVWWREIWFELSWYLFLRKEPKKYLGHNPLAHFMMFFLFTLVGLFMIVSGM
ALYAEGQGPGSWTRGLFGWVFWLFPNTQDLRTLHHLGLWVMVCFTMLHVYAAIREDIMSRQSMLSTMISGRRMFKDDRP

Sequences:

>Translated_239_residues
MSTVTDEAAPEVILGTTRHPSVYIYEAPVRLWHWLNAACIVVLAVTGYLIGSPPPSLAGDAGGVFRFGALRFAHFAAGLL
FAGGFVFRAYWAFVGNHYARQLFVLPFWRAVWWREIWFELSWYLFLRKEPKKYLGHNPLAHFMMFFLFTLVGLFMIVSGM
ALYAEGQGPGSWTRGLFGWVFWLFPNTQDLRTLHHLGLWVMVCFTMLHVYAAIREDIMSRQSMLSTMISGRRMFKDDRP
>Mature_238_residues
STVTDEAAPEVILGTTRHPSVYIYEAPVRLWHWLNAACIVVLAVTGYLIGSPPPSLAGDAGGVFRFGALRFAHFAAGLLF
AGGFVFRAYWAFVGNHYARQLFVLPFWRAVWWREIWFELSWYLFLRKEPKKYLGHNPLAHFMMFFLFTLVGLFMIVSGMA
LYAEGQGPGSWTRGLFGWVFWLFPNTQDLRTLHHLGLWVMVCFTMLHVYAAIREDIMSRQSMLSTMISGRRMFKDDRP

Specific function: Probable b-type cytochrome [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=217, Percent_Identity=46.5437788018433, Blast_Score=211, Evalue=3e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 27516; Mature: 27384

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00883 NI_HGENASE_CYTB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVTDEAAPEVILGTTRHPSVYIYEAPVRLWHWLNAACIVVLAVTGYLIGSPPPSLAGD
CCCCCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AGGVFRFGALRFAHFAAGLLFAGGFVFRAYWAFVGNHYARQLFVLPFWRAVWWREIWFEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SWYLFLRKEPKKYLGHNPLAHFMMFFLFTLVGLFMIVSGMALYAEGQGPGSWTRGLFGWV
HHHHEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHH
FWLFPNTQDLRTLHHLGLWVMVCFTMLHVYAAIREDIMSRQSMLSTMISGRRMFKDDRP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STVTDEAAPEVILGTTRHPSVYIYEAPVRLWHWLNAACIVVLAVTGYLIGSPPPSLAGD
CCCCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AGGVFRFGALRFAHFAAGLLFAGGFVFRAYWAFVGNHYARQLFVLPFWRAVWWREIWFEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SWYLFLRKEPKKYLGHNPLAHFMMFFLFTLVGLFMIVSGMALYAEGQGPGSWTRGLFGWV
HHHHEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHH
FWLFPNTQDLRTLHHLGLWVMVCFTMLHVYAAIREDIMSRQSMLSTMISGRRMFKDDRP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7966281 [H]