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The map label for this gene is rpoH [H]

Identifier: 83592446

GI number: 83592446

Start: 1305537

End: 1306436

Strand: Reverse

Name: rpoH [H]

Synonym: Rru_A1110

Alternate gene names: 83592446

Gene position: 1306436-1305537 (Counterclockwise)

Preceding gene: 83592447

Following gene: 83592445

Centisome position: 30.01

GC content: 61.78

Gene sequence:

>900_bases
ATGGCGACAGTGGCTCCTGGTCTTTCAATCGGTCCTGAAAGCAATTTGACGCGATATTTGCAGAACATCCGCAAATTTCC
CATGCTTGCCCCCGAAGAAGAATACACCCTCGCCCAGCGCCTGCGCGATTCGGGCGACTCCGAAGCGGCCCACCGTCTGG
TGACCAGCCATCTGCGTCTCGTCGCCAAGATCGCCATGGGCTACCGCGGATATGGTCTGCCGATGGGCGAGGTCATCAGC
GAGGGCAACGTCGGCCTGATGCAGGCGGTGAAACGCTTCGATCCCGAGCGCGGCTTCCGTCTGGCCACCTATGCTATGTG
GTGGATCCGCGCCGCGATCCAAGAGTACATCCTGCATTCCTGGTCGCTGGTCAAAATGGGCACGACCGCCGCCCAGAAAA
AGCTGTTCTTCAATCTGCGCAAGATGAAGGGCCAGCTTCAATTGATGGACGAAGGCGACATGCATCCCGACAAGGTCACC
CAGATCGCCACCAAGCTGGGGGTGCCCGAGCAGGATGTCATCAACATGAATCGCCGGCTGTCGAGCCCCGACCACTCGCT
CAACGCCCCCGTACGGATGGATGGCGATGGCGAATGGCAGGATTGGCTGGTGGACGAAAGCGACGATCAGGAAACCACCC
TGGCCGAAAGCCAGGAAATGGGCCAGCGCCGCGCCCTGCTGTCGGGAGCCTTGAAATCCCTCAATGAGCGCGAGCGCCAC
ATCCTGACCCAGCGCCGCCTGCGCGATGATCCGGTGACCCTGGAAGATCTCTCCCAGCATTACGGCATCTCCCGCGAGCG
CGTTCGCCAGATCGAGGTGCGGGCCTTTGAAAAGCTGCAGAAATGGATGCACGGGGCGATGACCGGGGCGGCGCCCGCCG
TCGCCGCGGTCGCCTGTTAG

Upstream 100 bases:

>100_bases
ATAAAACCTCCCTCGCCGATCCACAGACCGCATCGTCCCGCACCCATTATGGCCCCGGTTCGGCCCATGCCAGCCCCGGG
GGTCTATTGAGGAGGATTCC

Downstream 100 bases:

>100_bases
AGCAAATCCCCGAGCCCTCTGAACCAGGGTGCGACGACGATTTGCCGGACTATCACGATTTTAGAGCGGTGAGCGGGGAC
GCGATTTCCCGCTCACCGTT

Product: RNA polymerase factor sigma-32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MATVAPGLSIGPESNLTRYLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAAHRLVTSHLRLVAKIAMGYRGYGLPMGEVIS
EGNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHSWSLVKMGTTAAQKKLFFNLRKMKGQLQLMDEGDMHPDKVT
QIATKLGVPEQDVINMNRRLSSPDHSLNAPVRMDGDGEWQDWLVDESDDQETTLAESQEMGQRRALLSGALKSLNERERH
ILTQRRLRDDPVTLEDLSQHYGISRERVRQIEVRAFEKLQKWMHGAMTGAAPAVAAVAC

Sequences:

>Translated_299_residues
MATVAPGLSIGPESNLTRYLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAAHRLVTSHLRLVAKIAMGYRGYGLPMGEVIS
EGNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHSWSLVKMGTTAAQKKLFFNLRKMKGQLQLMDEGDMHPDKVT
QIATKLGVPEQDVINMNRRLSSPDHSLNAPVRMDGDGEWQDWLVDESDDQETTLAESQEMGQRRALLSGALKSLNERERH
ILTQRRLRDDPVTLEDLSQHYGISRERVRQIEVRAFEKLQKWMHGAMTGAAPAVAAVAC
>Mature_298_residues
ATVAPGLSIGPESNLTRYLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAAHRLVTSHLRLVAKIAMGYRGYGLPMGEVISE
GNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHSWSLVKMGTTAAQKKLFFNLRKMKGQLQLMDEGDMHPDKVTQ
IATKLGVPEQDVINMNRRLSSPDHSLNAPVRMDGDGEWQDWLVDESDDQETTLAESQEMGQRRALLSGALKSLNERERHI
LTQRRLRDDPVTLEDLSQHYGISRERVRQIEVRAFEKLQKWMHGAMTGAAPAVAAVAC

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=287, Percent_Identity=40.418118466899, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1789098, Length=269, Percent_Identity=35.6877323420074, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789448, Length=234, Percent_Identity=30.3418803418803, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 33858; Mature: 33727

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVAPGLSIGPESNLTRYLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAAHRLVTSHLRL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VAKIAMGYRGYGLPMGEVISEGNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHS
HHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
WSLVKMGTTAAQKKLFFNLRKMKGQLQLMDEGDMHPDKVTQIATKLGVPEQDVINMNRRL
HHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC
SSPDHSLNAPVRMDGDGEWQDWLVDESDDQETTLAESQEMGQRRALLSGALKSLNERERH
CCCCCCCCCCEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTQRRLRDDPVTLEDLSQHYGISRERVRQIEVRAFEKLQKWMHGAMTGAAPAVAAVAC
HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure 
ATVAPGLSIGPESNLTRYLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAAHRLVTSHLRL
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VAKIAMGYRGYGLPMGEVISEGNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHS
HHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
WSLVKMGTTAAQKKLFFNLRKMKGQLQLMDEGDMHPDKVTQIATKLGVPEQDVINMNRRL
HHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC
SSPDHSLNAPVRMDGDGEWQDWLVDESDDQETTLAESQEMGQRRALLSGALKSLNERERH
CCCCCCCCCCEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTQRRLRDDPVTLEDLSQHYGISRERVRQIEVRAFEKLQKWMHGAMTGAAPAVAAVAC
HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606166 [H]