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The map label for this gene is yhjC [C]

Identifier: 83592377

GI number: 83592377

Start: 1234411

End: 1235331

Strand: Direct

Name: yhjC [C]

Synonym: Rru_A1041

Alternate gene names: 83592377

Gene position: 1234411-1235331 (Clockwise)

Preceding gene: 83592370

Following gene: 83592378

Centisome position: 28.36

GC content: 66.34

Gene sequence:

>921_bases
ATGGACCGGCTGACGTTGATGGAGACTTTTACCAAGGTCGCGGAGTTGGGCAGCTTTTCGCGGGCAGCCGAACGCTTGGG
GCTGTCGCGCTCGGTGGTCAGCAAATATGTCTCGGCGCTTGAGGACCGGCTGGGGGCGCGTCTGGTCAACCGCACCACCC
GGCGGCTGTCACTGACCGAGGTCGGCGAGGTCTATCTGCTGCGCTGTCAGGCGATCCTCGCCGATCTGGAAGAGGCCGAG
CAGGCGGCCGGGGCCCTGCATGGCGCGGCGCGCGGCACCTTGCGGATCAATGCCCCGATGTCCTTTGGCTTTCGCCATCT
CGCCGCGGCCATTCCACCGTTTCTGGCCCATCATCCCGGCCTTGGCGTCGATATGACGCTGGATGACCGTTTCGTCGATC
TGCTCGATGCCGGTTTCGATGTCGCCGTGCGGATCGGCAGCCTGCCCGATAGCAGCCTGATCGCCGTGCGGTTGGCGCCG
CTGCATATCGTCGTTTGCGCCAGCCCGGAGTACATCAAGGCCCAGGGCGCCCCCGAGCGGCCCGAGGATCTGACCGGGCA
TAATTGCCTGATCTACAGCCTGCAGCGCTTTGGCGATCTTTATCCGCTGGTTCACGCCGGGGGCGGCGAACAGGTCAGCG
TGCCGGTCCATGGGCGCTTCCGCGCCAACAACGGCGACGCCTTGCGGGCGGCGGCGGTGGCGGGGGGCGGGGTGATGATC
TCGCCGACTTTCCTGTGCGGCGATGACCTGCGGGCCGGCCGGCTGGTGCGCCTGCTGCCCGAGTGGACCGGCCCCGAGCA
GGGGATCAATGCCGTCTATCCCCATAATCGCCATGTCTCGGCCAAGGTTCGCGCCTTTGTCGATCACCTGAAGGGCTGGT
GCGGCAAACTGCCCTATTGGGACGAGGGGGTGTTTCCCTAG

Upstream 100 bases:

>100_bases
TTGGAGAAATTCCTGGACGGCGCCGTCCGCCGGGGGTGCACTACCAGCCAGAGGGCTGGCATGGGCCGCCCGGGCGGCTT
GAGGGGAGTGACCACCGGCC

Downstream 100 bases:

>100_bases
CCCCCAAGCAAATCCCCGAGCGATCTGAGCCAGAGTGCGCCGATGATTTTCTTGATGATCAAGCTCTTAGAGCGCTGGGC
GGCGAGCGGAGTCCCCGCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDRLTLMETFTKVAELGSFSRAAERLGLSRSVVSKYVSALEDRLGARLVNRTTRRLSLTEVGEVYLLRCQAILADLEEAE
QAAGALHGAARGTLRINAPMSFGFRHLAAAIPPFLAHHPGLGVDMTLDDRFVDLLDAGFDVAVRIGSLPDSSLIAVRLAP
LHIVVCASPEYIKAQGAPERPEDLTGHNCLIYSLQRFGDLYPLVHAGGGEQVSVPVHGRFRANNGDALRAAAVAGGGVMI
SPTFLCGDDLRAGRLVRLLPEWTGPEQGINAVYPHNRHVSAKVRAFVDHLKGWCGKLPYWDEGVFP

Sequences:

>Translated_306_residues
MDRLTLMETFTKVAELGSFSRAAERLGLSRSVVSKYVSALEDRLGARLVNRTTRRLSLTEVGEVYLLRCQAILADLEEAE
QAAGALHGAARGTLRINAPMSFGFRHLAAAIPPFLAHHPGLGVDMTLDDRFVDLLDAGFDVAVRIGSLPDSSLIAVRLAP
LHIVVCASPEYIKAQGAPERPEDLTGHNCLIYSLQRFGDLYPLVHAGGGEQVSVPVHGRFRANNGDALRAAAVAGGGVMI
SPTFLCGDDLRAGRLVRLLPEWTGPEQGINAVYPHNRHVSAKVRAFVDHLKGWCGKLPYWDEGVFP
>Mature_306_residues
MDRLTLMETFTKVAELGSFSRAAERLGLSRSVVSKYVSALEDRLGARLVNRTTRRLSLTEVGEVYLLRCQAILADLEEAE
QAAGALHGAARGTLRINAPMSFGFRHLAAAIPPFLAHHPGLGVDMTLDDRFVDLLDAGFDVAVRIGSLPDSSLIAVRLAP
LHIVVCASPEYIKAQGAPERPEDLTGHNCLIYSLQRFGDLYPLVHAGGGEQVSVPVHGRFRANNGDALRAAAVAGGGVMI
SPTFLCGDDLRAGRLVRLLPEWTGPEQGINAVYPHNRHVSAKVRAFVDHLKGWCGKLPYWDEGVFP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=36.5771812080537, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=36.2068965517241, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1789639, Length=300, Percent_Identity=34.3333333333333, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=31.6901408450704, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=31.8021201413428, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=29.8969072164948, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=32.2033898305085, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=30.0395256916996, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=24.6575342465753, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790011, Length=265, Percent_Identity=24.5283018867925, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=298, Percent_Identity=28.1879194630872, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=25.5102040816327, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=257, Percent_Identity=26.0700389105058, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33134; Mature: 33134

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS00024 HEMOPEXIN ; PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLTLMETFTKVAELGSFSRAAERLGLSRSVVSKYVSALEDRLGARLVNRTTRRLSLTE
CCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH
VGEVYLLRCQAILADLEEAEQAAGALHGAARGTLRINAPMSFGFRHLAAAIPPFLAHHPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCHHHHCCCC
LGVDMTLDDRFVDLLDAGFDVAVRIGSLPDSSLIAVRLAPLHIVVCASPEYIKAQGAPER
CCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEEEEECCCCEEECCCCCCC
PEDLTGHNCLIYSLQRFGDLYPLVHAGGGEQVSVPVHGRFRANNGDALRAAAVAGGGVMI
CCCCCCCCCEEEEHHHHCCCCCEEECCCCCEEEEEECCEEECCCCCEEEEHEEECCCEEE
SPTFLCGDDLRAGRLVRLLPEWTGPEQGINAVYPHNRHVSAKVRAFVDHLKGWCGKLPYW
ECEEEECCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
DEGVFP
CCCCCC
>Mature Secondary Structure
MDRLTLMETFTKVAELGSFSRAAERLGLSRSVVSKYVSALEDRLGARLVNRTTRRLSLTE
CCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH
VGEVYLLRCQAILADLEEAEQAAGALHGAARGTLRINAPMSFGFRHLAAAIPPFLAHHPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCHHHHCCCC
LGVDMTLDDRFVDLLDAGFDVAVRIGSLPDSSLIAVRLAPLHIVVCASPEYIKAQGAPER
CCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEEEEECCCCEEECCCCCCC
PEDLTGHNCLIYSLQRFGDLYPLVHAGGGEQVSVPVHGRFRANNGDALRAAAVAGGGVMI
CCCCCCCCCEEEEHHHHCCCCCEEECCCCCEEEEEECCEEECCCCCEEEEHEEECCCEEE
SPTFLCGDDLRAGRLVRLLPEWTGPEQGINAVYPHNRHVSAKVRAFVDHLKGWCGKLPYW
ECEEEECCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
DEGVFP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]