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The map label for this gene is aapJ [H]

Identifier: 83592340

GI number: 83592340

Start: 1190626

End: 1191648

Strand: Reverse

Name: aapJ [H]

Synonym: Rru_A1004

Alternate gene names: 83592340

Gene position: 1191648-1190626 (Counterclockwise)

Preceding gene: 83592343

Following gene: 83592339

Centisome position: 27.38

GC content: 62.95

Gene sequence:

>1023_bases
ATGAAGAAGATGATCGCGGCTCTGGCCGCTTTCGGCGCGGCCGGCGTCATCGCCAGCGGTTCGGCGATGGCCGCCAGCAC
TCTCGACACGGTCAAAAGCCGCGGCGAAGTGACCTGCGGCGTCAACAACGGCCTGCCGGGATTCGCGCTTCCCGATGACA
AGGGGCATTGGACCGGCATCGACGTTGATATCTGCCGGGCCGTTGCCGCCGCCGTTTTCGGTGATGCCAAAAAAGTGAAG
TTCGTTCCGCTCAACGCCAAGGAACGCTTCACCGCCTTGCAGTCCGGTGAAATCGATGTGCTGTCGCGCAACACCACCTG
GACGCAGACCCGGGACGCCTCGCTGGGCCTGATCTTCGCCGGGGTGAACTATTACGACGGCCAGGGCTTCATGGTGAAGA
AGGAGCTGGGGGTTTCCAGCGCCAAGGAACTCAACGGCGCCTCGATCTGTATTCAGTCGGGCACCACGACCGAGCTGAAT
CTGGCCGATTACTTCCGCGCCAACGCCATGACCTACAGCCCGGTGGTGTTCGACACCTCCGACCAGACCGTTCAGGGCTT
CGCCGGTGGCCGCTGCGACGTGCTGACCTCCGACCAGTCCCAGCTTTACGCGCTGCGCATCAAACTTGAAGATCCCAAGA
GCGCCATCGTCCTGCCCGAGGTGATTTCCAAGGAGCCTTTGGGCCCGATGGTGCGCCAGGGCGATGATCAGTGGCTGAAC
ATCGTGCGTTGGTCGCTGTTCGCCCAGCTTAACGCCGAGGAACTGGGCGTGACCTCGGCCAATGCCGACGAGGTCAAGGC
CGGCACCGACCAGAACGTCAAGCGTCTGCTGGGCACCGAAGGCGAAATGGGCAAGCAGCTCGGCCTGGGCAACGACTGGG
CCTATGCCATCGTCAAGCAGGTCGGCAATTACGGCGAGATGTTCGAGCGCAACATCGGCAAGGGCTCGCCCCTCGAGATC
GAGCGCGGGCTGAACGCCCTGTGGAACAAGGGTGGCATCCAGTACGCCCCGCCCATCCGCTAA

Upstream 100 bases:

>100_bases
AGCGGAATGCCGCATTCTTCCGTGTCCGCAACGCTGTGGACACCACCGCGCCCGACACCCGCTCGGGCTCGAAAAAAACG
AGAACAAGGGAGTACCTCGG

Downstream 100 bases:

>100_bases
CCTGTCCGCGGGCGGCGGGGGGCCTCTCTCCCGTCGCCCGGCTTCCATGGGCATTGACGGATGCCTTCGATCCCTGCCTC
CACGGCCCCAGGAGAGCCCA

Product: lysine-arginine-ornithine-binding periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKKMIAALAAFGAAGVIASGSAMAASTLDTVKSRGEVTCGVNNGLPGFALPDDKGHWTGIDVDICRAVAAAVFGDAKKVK
FVPLNAKERFTALQSGEIDVLSRNTTWTQTRDASLGLIFAGVNYYDGQGFMVKKELGVSSAKELNGASICIQSGTTTELN
LADYFRANAMTYSPVVFDTSDQTVQGFAGGRCDVLTSDQSQLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWLN
IVRWSLFAQLNAEELGVTSANADEVKAGTDQNVKRLLGTEGEMGKQLGLGNDWAYAIVKQVGNYGEMFERNIGKGSPLEI
ERGLNALWNKGGIQYAPPIR

Sequences:

>Translated_340_residues
MKKMIAALAAFGAAGVIASGSAMAASTLDTVKSRGEVTCGVNNGLPGFALPDDKGHWTGIDVDICRAVAAAVFGDAKKVK
FVPLNAKERFTALQSGEIDVLSRNTTWTQTRDASLGLIFAGVNYYDGQGFMVKKELGVSSAKELNGASICIQSGTTTELN
LADYFRANAMTYSPVVFDTSDQTVQGFAGGRCDVLTSDQSQLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWLN
IVRWSLFAQLNAEELGVTSANADEVKAGTDQNVKRLLGTEGEMGKQLGLGNDWAYAIVKQVGNYGEMFERNIGKGSPLEI
ERGLNALWNKGGIQYAPPIR
>Mature_340_residues
MKKMIAALAAFGAAGVIASGSAMAASTLDTVKSRGEVTCGVNNGLPGFALPDDKGHWTGIDVDICRAVAAAVFGDAKKVK
FVPLNAKERFTALQSGEIDVLSRNTTWTQTRDASLGLIFAGVNYYDGQGFMVKKELGVSSAKELNGASICIQSGTTTELN
LADYFRANAMTYSPVVFDTSDQTVQGFAGGRCDVLTSDQSQLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWLN
IVRWSLFAQLNAEELGVTSANADEVKAGTDQNVKRLLGTEGEMGKQLGLGNDWAYAIVKQVGNYGEMFERNIGKGSPLEI
ERGLNALWNKGGIQYAPPIR

Specific function: Part of a binding-protein-dependent transport system for L-amino acids, affects the uptake as well as efflux of these amino acids [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005768
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 36412; Mature: 36412

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMIAALAAFGAAGVIASGSAMAASTLDTVKSRGEVTCGVNNGLPGFALPDDKGHWTGI
CHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECC
DVDICRAVAAAVFGDAKKVKFVPLNAKERFTALQSGEIDVLSRNTTWTQTRDASLGLIFA
CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEE
GVNYYDGQGFMVKKELGVSSAKELNGASICIQSGTTTELNLADYFRANAMTYSPVVFDTS
ECEEECCCCEEEECCCCCCCHHHCCCEEEEEECCCCCEEEHHHHHHCCCEEECCEEECCC
DQTVQGFAGGRCDVLTSDQSQLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWLN
CCHHHCCCCCEEEEEECCCCEEEEEEEEECCCCCEEEEHHHHCCCCCCHHHHCCCHHHHH
IVRWSLFAQLNAEELGVTSANADEVKAGTDQNVKRLLGTEGEMGKQLGLGNDWAYAIVKQ
HHHHHHHHHCCHHHCCCCCCCHHHHCCCCCHHHHHHHCCCCCCHHHCCCCCHHHHHHHHH
VGNYGEMFERNIGKGSPLEIERGLNALWNKGGIQYAPPIR
HCCHHHHHHHCCCCCCCEEHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKKMIAALAAFGAAGVIASGSAMAASTLDTVKSRGEVTCGVNNGLPGFALPDDKGHWTGI
CHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECC
DVDICRAVAAAVFGDAKKVKFVPLNAKERFTALQSGEIDVLSRNTTWTQTRDASLGLIFA
CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEE
GVNYYDGQGFMVKKELGVSSAKELNGASICIQSGTTTELNLADYFRANAMTYSPVVFDTS
ECEEECCCCEEEECCCCCCCHHHCCCEEEEEECCCCCEEEHHHHHHCCCEEECCEEECCC
DQTVQGFAGGRCDVLTSDQSQLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWLN
CCHHHCCCCCEEEEEECCCCEEEEEEEEECCCCCEEEEHHHHCCCCCCHHHHCCCHHHHH
IVRWSLFAQLNAEELGVTSANADEVKAGTDQNVKRLLGTEGEMGKQLGLGNDWAYAIVKQ
HHHHHHHHHCCHHHCCCCCCCHHHHCCCCCHHHHHHHCCCCCCHHHCCCCCHHHHHHHHH
VGNYGEMFERNIGKGSPLEIERGLNALWNKGGIQYAPPIR
HCCHHHHHHHCCCCCCCEEHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8898392 [H]