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The map label for this gene is yhdX [H]

Identifier: 83592339

GI number: 83592339

Start: 1189330

End: 1190526

Strand: Reverse

Name: yhdX [H]

Synonym: Rru_A1003

Alternate gene names: 83592339

Gene position: 1190526-1189330 (Counterclockwise)

Preceding gene: 83592340

Following gene: 83592338

Centisome position: 27.35

GC content: 64.91

Gene sequence:

>1197_bases
ATGACCCCTCCGATCCACCCCCCGGGACCGCTCAAGGCCCCCCGGCCGCATCCCTTGCGTGACCCACGTGTCCGGGCGAT
CGCCTTTCAGGTGCTGACCATCGCCGCCCTCGTCTGGTTTTTCTGGGCGATTTTCGACAACACCCTGACCAATATGCGCA
CGCGGGGCATCACCACCGGCTTCGCCTTCCTCGACCATTCGGCGGGGTTTGGCATCCTGATGAGCCTGATCCCCTATGAC
GAGACCTATTCCTATGGCCGGACCTTCGTCGTCGGCCTGCTCAATACGCTGTTGGTTTCGGGCCTGGGCGTCATCGCCGC
CACGCTGATCGGCTTCGTCGTCGGCGTCGCCCGGTTGTCGCGCAACTGGCTGATCGCCAAGCTGGCGCTGATCTATGTCG
AGACCCTGCGCAACATCCCGCTGCTGCTGCAGATCTTTTTCTGGTATTTCGCCGTTCTGCGCCCCCTGCCCCAACCCCGG
CAGAGCCTGGAGCTGGGCGCGTTGTTCTTCCTCAACAATCGCGGCTTCTATATGCCCTCGCCGATCGCCGGCGACGGGAT
GGCCTTGGTCGGCCTCGCCCTGGTCGTCGCCCTCGCCCTCGCCCTGGCCATCGGCCGCTGGGCGACCCGCCGACGCATGG
CGACGGGTCTGGGCTTTCCCAGTTGGCGCACCGGCCTCGCCCTGGTTCTCGGCCTGCCGCTCCTTGCCTTCCTGGCCCTG
GGCACCCCGGTCACCTTCGACGTTCCCCATCTCCAGGGCTTCAATTTCGTCGGCGGTTCGCGGCTGATCCCCGAAATGGT
GGCGCTGTTGCTGGCGCTGTCGATGTACACCGCCGCCTTCATCGCCGAGATCGTCCGCTCGGGGATTCTCGCCGTCAGCC
ACGGCCAGACCGAGGCGGCCCATTCCCTGGGGCTCAAGCCGACCGCCACCTTGCGCCTGATCGTGCTGCCCCAGGCGCTG
CGGGTGATGATCCCGCCGACCACCAGCCAATATCTCAATCTGATCAAGAACTCGTCGCTGGCCACCGCCATCGGCTATCC
CGATCTGGTCTCGGTGTTCATGGGCACGACGCTCAATCAGACCGGTCAGGCCGTCGAGATCGTCGGCATGACCATGGCGG
TCTATTTGCTGATCAGCCTGGTCGTGAGCGGATTGATGAATTGGTATAACCGGGCCGTCGCCCTGAAGGAGCGCTGA

Upstream 100 bases:

>100_bases
ACCTGTCCGCGGGCGGCGGGGGGCCTCTCTCCCGTCGCCCGGCTTCCATGGGCATTGACGGATGCCTTCGATCCCTGCCT
CCACGGCCCCAGGAGAGCCC

Downstream 100 bases:

>100_bases
GCCATGGCTGTCTTCGCCCCCAAGGCGGCCCTGCCGCCGCCGGTCCAGACCACCGGTCCGATCGCCTGGATCCGCCAGAA
TCTGCTGTCGTCGCCCTTCA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTPPIHPPGPLKAPRPHPLRDPRVRAIAFQVLTIAALVWFFWAIFDNTLTNMRTRGITTGFAFLDHSAGFGILMSLIPYD
ETYSYGRTFVVGLLNTLLVSGLGVIAATLIGFVVGVARLSRNWLIAKLALIYVETLRNIPLLLQIFFWYFAVLRPLPQPR
QSLELGALFFLNNRGFYMPSPIAGDGMALVGLALVVALALALAIGRWATRRRMATGLGFPSWRTGLALVLGLPLLAFLAL
GTPVTFDVPHLQGFNFVGGSRLIPEMVALLLALSMYTAAFIAEIVRSGILAVSHGQTEAAHSLGLKPTATLRLIVLPQAL
RVMIPPTTSQYLNLIKNSSLATAIGYPDLVSVFMGTTLNQTGQAVEIVGMTMAVYLLISLVVSGLMNWYNRAVALKER

Sequences:

>Translated_398_residues
MTPPIHPPGPLKAPRPHPLRDPRVRAIAFQVLTIAALVWFFWAIFDNTLTNMRTRGITTGFAFLDHSAGFGILMSLIPYD
ETYSYGRTFVVGLLNTLLVSGLGVIAATLIGFVVGVARLSRNWLIAKLALIYVETLRNIPLLLQIFFWYFAVLRPLPQPR
QSLELGALFFLNNRGFYMPSPIAGDGMALVGLALVVALALALAIGRWATRRRMATGLGFPSWRTGLALVLGLPLLAFLAL
GTPVTFDVPHLQGFNFVGGSRLIPEMVALLLALSMYTAAFIAEIVRSGILAVSHGQTEAAHSLGLKPTATLRLIVLPQAL
RVMIPPTTSQYLNLIKNSSLATAIGYPDLVSVFMGTTLNQTGQAVEIVGMTMAVYLLISLVVSGLMNWYNRAVALKER
>Mature_397_residues
TPPIHPPGPLKAPRPHPLRDPRVRAIAFQVLTIAALVWFFWAIFDNTLTNMRTRGITTGFAFLDHSAGFGILMSLIPYDE
TYSYGRTFVVGLLNTLLVSGLGVIAATLIGFVVGVARLSRNWLIAKLALIYVETLRNIPLLLQIFFWYFAVLRPLPQPRQ
SLELGALFFLNNRGFYMPSPIAGDGMALVGLALVVALALALAIGRWATRRRMATGLGFPSWRTGLALVLGLPLLAFLALG
TPVTFDVPHLQGFNFVGGSRLIPEMVALLLALSMYTAAFIAEIVRSGILAVSHGQTEAAHSLGLKPTATLRLIVLPQALR
VMIPPTTSQYLNLIKNSSLATAIGYPDLVSVFMGTTLNQTGQAVEIVGMTMAVYLLISLVVSGLMNWYNRAVALKER

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=378, Percent_Identity=57.9365079365079, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1788226, Length=132, Percent_Identity=36.3636363636364, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786873, Length=134, Percent_Identity=36.5671641791045, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786874, Length=126, Percent_Identity=35.7142857142857, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87082239, Length=126, Percent_Identity=32.5396825396825, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787030, Length=130, Percent_Identity=33.8461538461538, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788645, Length=215, Percent_Identity=27.4418604651163, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 43295; Mature: 43164

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPPIHPPGPLKAPRPHPLRDPRVRAIAFQVLTIAALVWFFWAIFDNTLTNMRTRGITTG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FAFLDHSAGFGILMSLIPYDETYSYGRTFVVGLLNTLLVSGLGVIAATLIGFVVGVARLS
HHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNWLIAKLALIYVETLRNIPLLLQIFFWYFAVLRPLPQPRQSLELGALFFLNNRGFYMPS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHCEEEEECCCCCCCCC
PIAGDGMALVGLALVVALALALAIGRWATRRRMATGLGFPSWRTGLALVLGLPLLAFLAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
GTPVTFDVPHLQGFNFVGGSRLIPEMVALLLALSMYTAAFIAEIVRSGILAVSHGQTEAA
CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH
HSLGLKPTATLRLIVLPQALRVMIPPTTSQYLNLIKNSSLATAIGYPDLVSVFMGTTLNQ
HHCCCCCCHHEEEEEEHHHHHEECCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCC
TGQAVEIVGMTMAVYLLISLVVSGLMNWYNRAVALKER
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TPPIHPPGPLKAPRPHPLRDPRVRAIAFQVLTIAALVWFFWAIFDNTLTNMRTRGITTG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FAFLDHSAGFGILMSLIPYDETYSYGRTFVVGLLNTLLVSGLGVIAATLIGFVVGVARLS
HHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNWLIAKLALIYVETLRNIPLLLQIFFWYFAVLRPLPQPRQSLELGALFFLNNRGFYMPS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHCEEEEECCCCCCCCC
PIAGDGMALVGLALVVALALALAIGRWATRRRMATGLGFPSWRTGLALVLGLPLLAFLAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
GTPVTFDVPHLQGFNFVGGSRLIPEMVALLLALSMYTAAFIAEIVRSGILAVSHGQTEAA
CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH
HSLGLKPTATLRLIVLPQALRVMIPPTTSQYLNLIKNSSLATAIGYPDLVSVFMGTTLNQ
HHCCCCCCHHEEEEEEHHHHHEECCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCC
TGQAVEIVGMTMAVYLLISLVVSGLMNWYNRAVALKER
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]