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The map label for this gene is yliC [C]

Identifier: 83592316

GI number: 83592316

Start: 1165951

End: 1166892

Strand: Direct

Name: yliC [C]

Synonym: Rru_A0980

Alternate gene names: 83592316

Gene position: 1165951-1166892 (Clockwise)

Preceding gene: 83592315

Following gene: 83592317

Centisome position: 26.79

GC content: 64.01

Gene sequence:

>942_bases
ATGCCCGTTTTTCTGCTGCGCCGGGTGCTCGCCACCCTTCCCGTGCTCGTCGTCGTCGCCCTCATCGTTTTTCTGATGCT
GCGGCTGGCTCCCGGCGATCCCGCCGCCGCCATCGTCGGCGCCACCGGAACGGCCGAGGATATCGCCCGGGTGCGCGCCG
ATCTGGGCTTGGATGATCCGATGCCCGTGCAGTTCGTCCGCTGGGCCGGGCAGATGCTGCAGGGCGATCTGGGCGAATCC
TTTTTCATGAAGCAGACGGTGGTGGCGTTGATCGCCCAGCGTATCGAGCCGACGCTGTCGTTGTCGGCGATGACCCTGGT
GATGACCATCCTGATCGCCGTGCCGTTGGGCGTCATCGCCGCCTGGCGCCACGGCGGCTGGCTTGATCGGGCGCTGATGG
GCTTTTCGGTGCTGGGCTTTTCGATCCCGGCCTTCGTTATCGGCTATTGCCTGATCTGGCTGTTTGCCATGCATTGGCAA
ATGCTGCCCGTTCAGGGCTATGTGCGCTTTGGCGATGATCCATCGCGCTGGCTGCGCCATCTGATCATGCCCGCCGTCAC
CCTTTCGATCATCTATGTGGCGCTGATCGCCCGCGTCACCCGCGCCGCCGTCGCCGAGGCGATGACCGAGGATTACATCC
GCACCGCGCGCGCCAAGGGGATCAGCGAGGTTCGGGTGCTGATGCGCCATGCCCTGGCCAATGCCGCCGTGCCCATCGTC
ACCGTGATCGGCATCGGCGTGGCCATGCTGATCGGCGGCGTGGTGGTGACCGAAGCGGTCTTCGCCATCCCCGGATTGGG
ACAGTTGACGGTGGATGCCGTGTTGTCGCGGGATTTCCCGCTGATCCAGGGCATCACCTTGTTCTTCTCGGTCCTCTACA
TGCTGATCAATCTGGCGGTCGATCTCAGCTATCTGCTGTTCGATCCGCGGATCCGCTACTGA

Upstream 100 bases:

>100_bases
ACGCCTCCCCGTCGGTCCCTCTCCCGGTGCGCGGACCTGTTCCCCCAAGGCCGCGCACCGGTTCCCCCGTCCCTCCGCTC
GCCGCCGCCAAGAGGCCGTC

Downstream 100 bases:

>100_bases
TAGCAAGAAGGCGGCCCCCCATGACCTCCCCCCTTTCGTCTTCGGCCCCGCGTCCCGCCGCGACCGACCCGGCTCCCGCC
CTTCGTCGGCGCTCGCTAAC

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MPVFLLRRVLATLPVLVVVALIVFLMLRLAPGDPAAAIVGATGTAEDIARVRADLGLDDPMPVQFVRWAGQMLQGDLGES
FFMKQTVVALIAQRIEPTLSLSAMTLVMTILIAVPLGVIAAWRHGGWLDRALMGFSVLGFSIPAFVIGYCLIWLFAMHWQ
MLPVQGYVRFGDDPSRWLRHLIMPAVTLSIIYVALIARVTRAAVAEAMTEDYIRTARAKGISEVRVLMRHALANAAVPIV
TVIGIGVAMLIGGVVVTEAVFAIPGLGQLTVDAVLSRDFPLIQGITLFFSVLYMLINLAVDLSYLLFDPRIRY

Sequences:

>Translated_313_residues
MPVFLLRRVLATLPVLVVVALIVFLMLRLAPGDPAAAIVGATGTAEDIARVRADLGLDDPMPVQFVRWAGQMLQGDLGES
FFMKQTVVALIAQRIEPTLSLSAMTLVMTILIAVPLGVIAAWRHGGWLDRALMGFSVLGFSIPAFVIGYCLIWLFAMHWQ
MLPVQGYVRFGDDPSRWLRHLIMPAVTLSIIYVALIARVTRAAVAEAMTEDYIRTARAKGISEVRVLMRHALANAAVPIV
TVIGIGVAMLIGGVVVTEAVFAIPGLGQLTVDAVLSRDFPLIQGITLFFSVLYMLINLAVDLSYLLFDPRIRY
>Mature_312_residues
PVFLLRRVLATLPVLVVVALIVFLMLRLAPGDPAAAIVGATGTAEDIARVRADLGLDDPMPVQFVRWAGQMLQGDLGESF
FMKQTVVALIAQRIEPTLSLSAMTLVMTILIAVPLGVIAAWRHGGWLDRALMGFSVLGFSIPAFVIGYCLIWLFAMHWQM
LPVQGYVRFGDDPSRWLRHLIMPAVTLSIIYVALIARVTRAAVAEAMTEDYIRTARAKGISEVRVLMRHALANAAVPIVT
VIGIGVAMLIGGVVVTEAVFAIPGLGQLTVDAVLSRDFPLIQGITLFFSVLYMLINLAVDLSYLLFDPRIRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=41.8006430868167, Blast_Score=233, Evalue=9e-63,
Organism=Escherichia coli, GI1789965, Length=334, Percent_Identity=37.125748502994, Blast_Score=220, Evalue=9e-59,
Organism=Escherichia coli, GI1787497, Length=313, Percent_Identity=36.4217252396166, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1789888, Length=313, Percent_Identity=36.741214057508, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=36.7781155015198, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=26.5927977839335, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=25.3731343283582, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34155; Mature: 34023

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCCC
>Mature Secondary Structure 
PVFLLRRVLATLPVLVVVALIVFLMLRLAPGDPAAAIVGATGTAEDIARVRADLGLDDP
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCC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HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]