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The map label for this gene is yliD [C]

Identifier: 83592317

GI number: 83592317

Start: 1166913

End: 1167857

Strand: Direct

Name: yliD [C]

Synonym: Rru_A0981

Alternate gene names: 83592317

Gene position: 1166913-1167857 (Clockwise)

Preceding gene: 83592316

Following gene: 83592318

Centisome position: 26.81

GC content: 65.5

Gene sequence:

>945_bases
ATGACCTCCCCCCTTTCGTCTTCGGCCCCGCGTCCCGCCGCGACCGACCCGGCTCCCGCCCTTCGTCGGCGCTCGCTAAC
CCAGCGCCTGCTGGCCAATTGGTCGGTGCGGCTGGGGGGCGGCGTGCTGGCGATCCTCATCGCCATGGCGATCGCCGCGC
CCTGGCTTGGCACCATCGATCCCACCGCCATGGACCCGGGCAGCGGCAATCTGCTGCCGGGAACGCAAGCCGAGTTCATC
ACCCTGGCCGGCGATAGCTTCGACCATTTCTTCCTGATGGGCAGCGACAGCCTGGGCCGCGATATCTGGAGCCGCGCCCT
GTTCGGCGCCCGGGTGTCGATCACCGTGGGCATTTCGGTCGCCCTGGTCGCCCTGGTCTTTGGCATGACGGTGGGCATGG
CGGCGGGCTATTTCCGCCGGCTTGATACGGTGGTGATGCGGATCATGGACGGCGTCATGGCGATCCCGGGCATCTTGTTC
GCCATCAGTTTGGTCGCGCTGTTTGGCGGTACCCTGCCGACGGTGATCGCCGCCATCGCCATTCCCGAAATCCCCCGGGT
CGGCCGGCTGGTGCGGTCGGTGGTGCTGACCATCCGCGAGGAACCCTATGTCGAGGCGGCGATCGCCCTTGATACCCCGA
CCTGGAAGATCCTGCTGCGCCATATCATGCCCAACGCGGTGGCGCCGCTGATCATCCAAGGGACCTATGTCTGCGCCTCG
GCGATCCTGATCGAGGCGATCTTGTCGTTCCTGGGCGTCGGCCTGCCCGCCGATATGGCGACCTGGGGCAATATCATGGC
CGAGGGCCGCTCGCAGTTTAACCAGTATCCCCACAATGTGCTGTTTCCCGGGATCTTCCTGGTTCTGACCGTGCTGTCGG
TCAACATCCTGGGCGATGGCCTGCGTGATACCCTCGATCCCAAATTCAACAAGCGCGGAGGCTGA

Upstream 100 bases:

>100_bases
TCTTCTCGGTCCTCTACATGCTGATCAATCTGGCGGTCGATCTCAGCTATCTGCTGTTCGATCCGCGGATCCGCTACTGA
TAGCAAGAAGGCGGCCCCCC

Downstream 100 bases:

>100_bases
ACGATGAGCCAGGAAACGGCCCCGCCGATGGTTCTGTCGGTGCGTGATCTCACCATCGCCCTGCCGCCGGGCGCCGACCG
TCCCCATGCGGTCAGCGATA

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MTSPLSSSAPRPAATDPAPALRRRSLTQRLLANWSVRLGGGVLAILIAMAIAAPWLGTIDPTAMDPGSGNLLPGTQAEFI
TLAGDSFDHFFLMGSDSLGRDIWSRALFGARVSITVGISVALVALVFGMTVGMAAGYFRRLDTVVMRIMDGVMAIPGILF
AISLVALFGGTLPTVIAAIAIPEIPRVGRLVRSVVLTIREEPYVEAAIALDTPTWKILLRHIMPNAVAPLIIQGTYVCAS
AILIEAILSFLGVGLPADMATWGNIMAEGRSQFNQYPHNVLFPGIFLVLTVLSVNILGDGLRDTLDPKFNKRGG

Sequences:

>Translated_314_residues
MTSPLSSSAPRPAATDPAPALRRRSLTQRLLANWSVRLGGGVLAILIAMAIAAPWLGTIDPTAMDPGSGNLLPGTQAEFI
TLAGDSFDHFFLMGSDSLGRDIWSRALFGARVSITVGISVALVALVFGMTVGMAAGYFRRLDTVVMRIMDGVMAIPGILF
AISLVALFGGTLPTVIAAIAIPEIPRVGRLVRSVVLTIREEPYVEAAIALDTPTWKILLRHIMPNAVAPLIIQGTYVCAS
AILIEAILSFLGVGLPADMATWGNIMAEGRSQFNQYPHNVLFPGIFLVLTVLSVNILGDGLRDTLDPKFNKRGG
>Mature_313_residues
TSPLSSSAPRPAATDPAPALRRRSLTQRLLANWSVRLGGGVLAILIAMAIAAPWLGTIDPTAMDPGSGNLLPGTQAEFIT
LAGDSFDHFFLMGSDSLGRDIWSRALFGARVSITVGISVALVALVFGMTVGMAAGYFRRLDTVVMRIMDGVMAIPGILFA
ISLVALFGGTLPTVIAAIAIPEIPRVGRLVRSVVLTIREEPYVEAAIALDTPTWKILLRHIMPNAVAPLIIQGTYVCASA
ILIEAILSFLGVGLPADMATWGNIMAEGRSQFNQYPHNVLFPGIFLVLTVLSVNILGDGLRDTLDPKFNKRGG

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=266, Percent_Identity=38.3458646616541, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787760, Length=268, Percent_Identity=36.9402985074627, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI1787498, Length=221, Percent_Identity=37.10407239819, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789964, Length=265, Percent_Identity=37.3584905660377, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789889, Length=280, Percent_Identity=31.7857142857143, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787549, Length=213, Percent_Identity=35.6807511737089, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1788505, Length=221, Percent_Identity=28.5067873303167, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33345; Mature: 33214

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPLSSSAPRPAATDPAPALRRRSLTQRLLANWSVRLGGGVLAILIAMAIAAPWLGTID
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCC
PTAMDPGSGNLLPGTQAEFITLAGDSFDHFFLMGSDSLGRDIWSRALFGARVSITVGISV
CCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEHHHHH
ALVALVFGMTVGMAAGYFRRLDTVVMRIMDGVMAIPGILFAISLVALFGGTLPTVIAAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IPEIPRVGRLVRSVVLTIREEPYVEAAIALDTPTWKILLRHIMPNAVAPLIIQGTYVCAS
CCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AILIEAILSFLGVGLPADMATWGNIMAEGRSQFNQYPHNVLFPGIFLVLTVLSVNILGDG
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
LRDTLDPKFNKRGG
HHHHCCCCCCCCCC
>Mature Secondary Structure 
TSPLSSSAPRPAATDPAPALRRRSLTQRLLANWSVRLGGGVLAILIAMAIAAPWLGTID
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCC
PTAMDPGSGNLLPGTQAEFITLAGDSFDHFFLMGSDSLGRDIWSRALFGARVSITVGISV
CCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEHHHHH
ALVALVFGMTVGMAAGYFRRLDTVVMRIMDGVMAIPGILFAISLVALFGGTLPTVIAAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IPEIPRVGRLVRSVVLTIREEPYVEAAIALDTPTWKILLRHIMPNAVAPLIIQGTYVCAS
CCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AILIEAILSFLGVGLPADMATWGNIMAEGRSQFNQYPHNVLFPGIFLVLTVLSVNILGDG
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
LRDTLDPKFNKRGG
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]