Click here to switch to the map view.

The map label for this gene is ydhM [C]

Identifier: 83592224

GI number: 83592224

Start: 1065421

End: 1066032

Strand: Reverse

Name: ydhM [C]

Synonym: Rru_A0888

Alternate gene names: 83592224

Gene position: 1066032-1065421 (Counterclockwise)

Preceding gene: 83592226

Following gene: 83592223

Centisome position: 24.49

GC content: 60.78

Gene sequence:

>612_bases
ATGGGGCGACCCGCATCGGATACCAGGCAGAAACTGATCGATACCGCGCTCGAGCTGATGTGGACCAACAGCTATGGGAC
GGTCAGTGTCGATGACATCTGCAAGGCCGCCGATGTGAAGAAGGGCAGCTTCTATCACTTCTTTCCCTCCAAGGTGGATT
TGTCGATCGCCGCCATGGAGCAATCCCACCACGAGTTGGAAGAGACCTACGACAAGATCTTTTCCCCCGCCGTGCCGCCG
ATCGAACGCTTCATGCGCATGGCCGATTGCGTGATCGCCCTGCAGGCCGAGGTGGCCGAGAAATACGGCCATGTCTGCGG
CTGTCCCTGCGCCTCGCTGGGCTCCGAGATGGCCGGCCAGGAAGATGGAATCCGCGCCAAATTCGAAGACCTCGCCCACC
GCAAGGAGCGTTATTACGAGAATGCCCTGCGCGATATGGTCGGCGATGGCCTGCTGGCGCCAACCACCGATGTGAAGGTG
TTGGCCCAGGAGATCTATACCTATCTGGTGGGCCAAATGATGATCGCCCGCATCCAGAACGACCTCGCCCCGCTGAAGCG
CGATCTCAAGCGCGGCTTAGCGCGGCTTCTGGGCGTGGTGGAGCCGGCCTGA

Upstream 100 bases:

>100_bases
CAGCGCGGCGAGGCGCCGCTCTTCCCGGCCTCCCGCCACTTGACTGTTTAGTCAACTCGTCCTAATTATGTCAGACCATG
AGGCATGGAAGGAGCCGTCG

Downstream 100 bases:

>100_bases
TCCCGTCGCCCGCCTCCCCGGGGCGGGGAAGCCAAAGCGCCGGTCTTTGTAAAGCATTCTTAGACGCGGGGGTTTGGCCC
CCGGGACCACCGTCGTTGTC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Inactive Regulatory Protein; Regulatory Protein TetR Family; TetR Family Regulatory Protein; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MGRPASDTRQKLIDTALELMWTNSYGTVSVDDICKAADVKKGSFYHFFPSKVDLSIAAMEQSHHELEETYDKIFSPAVPP
IERFMRMADCVIALQAEVAEKYGHVCGCPCASLGSEMAGQEDGIRAKFEDLAHRKERYYENALRDMVGDGLLAPTTDVKV
LAQEIYTYLVGQMMIARIQNDLAPLKRDLKRGLARLLGVVEPA

Sequences:

>Translated_203_residues
MGRPASDTRQKLIDTALELMWTNSYGTVSVDDICKAADVKKGSFYHFFPSKVDLSIAAMEQSHHELEETYDKIFSPAVPP
IERFMRMADCVIALQAEVAEKYGHVCGCPCASLGSEMAGQEDGIRAKFEDLAHRKERYYENALRDMVGDGLLAPTTDVKV
LAQEIYTYLVGQMMIARIQNDLAPLKRDLKRGLARLLGVVEPA
>Mature_202_residues
GRPASDTRQKLIDTALELMWTNSYGTVSVDDICKAADVKKGSFYHFFPSKVDLSIAAMEQSHHELEETYDKIFSPAVPPI
ERFMRMADCVIALQAEVAEKYGHVCGCPCASLGSEMAGQEDGIRAKFEDLAHRKERYYENALRDMVGDGLLAPTTDVKVL
AQEIYTYLVGQMMIARIQNDLAPLKRDLKRGLARLLGVVEPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22618; Mature: 22487

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRPASDTRQKLIDTALELMWTNSYGTVSVDDICKAADVKKGSFYHFFPSKVDLSIAAME
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
QSHHELEETYDKIFSPAVPPIERFMRMADCVIALQAEVAEKYGHVCGCPCASLGSEMAGQ
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
EDGIRAKFEDLAHRKERYYENALRDMVGDGLLAPTTDVKVLAQEIYTYLVGQMMIARIQN
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DLAPLKRDLKRGLARLLGVVEPA
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GRPASDTRQKLIDTALELMWTNSYGTVSVDDICKAADVKKGSFYHFFPSKVDLSIAAME
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
QSHHELEETYDKIFSPAVPPIERFMRMADCVIALQAEVAEKYGHVCGCPCASLGSEMAGQ
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
EDGIRAKFEDLAHRKERYYENALRDMVGDGLLAPTTDVKVLAQEIYTYLVGQMMIARIQN
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DLAPLKRDLKRGLARLLGVVEPA
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA