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The map label for this gene is trbE [H]

Identifier: 83592144

GI number: 83592144

Start: 960586

End: 961362

Strand: Reverse

Name: trbE [H]

Synonym: Rru_A0805

Alternate gene names: 83592144

Gene position: 961362-960586 (Counterclockwise)

Preceding gene: 83592145

Following gene: 83592143

Centisome position: 22.09

GC content: 65.89

Gene sequence:

>777_bases
ATGCTAAACCTCGCCGAATACCGCGGCCATCCGGCTGGCCTCGCCGATTTCCTGCCCTGGGCGGCCTTGGTGGCGCCGGG
TGTCGTCCTCAACAAGGACGGCAGTTTCCAACGCTCGGCGCGGTTCCGCGGGCCGGATCTTGAGTCCGCCACCCCCGCCG
AGTTGGTCGGCGTCACCGCCCGGGTCAACAACGCGCTACGCCGCCTGGGCTCCGGCTGGGCGCTGTTCGTCGAGGCCGAC
CGTCTGCCAGCCACCGATTACCCGGAGAGCGCATTCCCGGACCCGGCCTCCGCCTTGGTCGATCTCGAACGCCAGGACGG
CTTCGAGCAGGCCGGCATTCATTTCGAAAGCCGCTTTTTCCTGACCATCTTGTGGCTGCCACCGGCCGAGAAGGTCGGTC
GGGCCGAGGGATGGCTTTACGAGGGAAAGTCCAAGACCGGTGTCGATCCCTGGGAACTGCTGCGCGGCTTCCTCGACCGC
ACCGACCGGATCTTGCACTTGGTCGAAGGCTTCGTTCCCGAAGTGGCGTGGCTCGACGACGGCGAGACCCTGACCTATTT
ACATTCAACCGTTTCCACCAAGCGGCAGAAGGTCCGAGTGCCCGAGATCCCGATGGTTCTCGACACCCTGCTGGCCGATC
AGCCGCTGACCGGCGGACTGGAGCCACGGCTGGGCAAGGCCCATCTGCGCCCCCTGACGGTGGTCGGGTTCCCCACCGCC
ACCCATCCCGGCATTCTCGACGACCTCATCAAGTCTACACCGCTCCCGGACAAGTGA

Upstream 100 bases:

>100_bases
CGGCCATGGCGCCGCCGTCTGGGCCGCCAAGCACGACGCCCAGTTCGTCGAGGTGATCCGCAGGCATCTCCGTTACCCCG
CCTATTTGCGAGCGTAACCG

Downstream 100 bases:

>100_bases
CCGATGTCGCCCTGCAGGAGGGCGAACAACTGGTCGGCTCCGGTCCAGTGGCCGCCGGGGACACCGTGCGCTGGATCATC
GGCGATACCGAGAGCGGTAC

Product: conjugal transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLNLAEYRGHPAGLADFLPWAALVAPGVVLNKDGSFQRSARFRGPDLESATPAELVGVTARVNNALRRLGSGWALFVEAD
RLPATDYPESAFPDPASALVDLERQDGFEQAGIHFESRFFLTILWLPPAEKVGRAEGWLYEGKSKTGVDPWELLRGFLDR
TDRILHLVEGFVPEVAWLDDGETLTYLHSTVSTKRQKVRVPEIPMVLDTLLADQPLTGGLEPRLGKAHLRPLTVVGFPTA
THPGILDDLIKSTPLPDK

Sequences:

>Translated_258_residues
MLNLAEYRGHPAGLADFLPWAALVAPGVVLNKDGSFQRSARFRGPDLESATPAELVGVTARVNNALRRLGSGWALFVEAD
RLPATDYPESAFPDPASALVDLERQDGFEQAGIHFESRFFLTILWLPPAEKVGRAEGWLYEGKSKTGVDPWELLRGFLDR
TDRILHLVEGFVPEVAWLDDGETLTYLHSTVSTKRQKVRVPEIPMVLDTLLADQPLTGGLEPRLGKAHLRPLTVVGFPTA
THPGILDDLIKSTPLPDK
>Mature_258_residues
MLNLAEYRGHPAGLADFLPWAALVAPGVVLNKDGSFQRSARFRGPDLESATPAELVGVTARVNNALRRLGSGWALFVEAD
RLPATDYPESAFPDPASALVDLERQDGFEQAGIHFESRFFLTILWLPPAEKVGRAEGWLYEGKSKTGVDPWELLRGFLDR
TDRILHLVEGFVPEVAWLDDGETLTYLHSTVSTKRQKVRVPEIPMVLDTLLADQPLTGGLEPRLGKAHLRPLTVVGFPTA
THPGILDDLIKSTPLPDK

Specific function: Unknown

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbE/virB4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004346
- InterPro:   IPR018145 [H]

Pfam domain/function: PF03135 CagE_TrbE_VirB [H]

EC number: NA

Molecular weight: Translated: 28391; Mature: 28391

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNLAEYRGHPAGLADFLPWAALVAPGVVLNKDGSFQRSARFRGPDLESATPAELVGVTA
CCCCHHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCHHHHHHHH
RVNNALRRLGSGWALFVEADRLPATDYPESAFPDPASALVDLERQDGFEQAGIHFESRFF
HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCEEECEEE
LTILWLPPAEKVGRAEGWLYEGKSKTGVDPWELLRGFLDRTDRILHLVEGFVPEVAWLDD
EEEEECCCHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
GETLTYLHSTVSTKRQKVRVPEIPMVLDTLLADQPLTGGLEPRLGKAHLRPLTVVGFPTA
CCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHCCEEEEEECCCC
THPGILDDLIKSTPLPDK
CCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLNLAEYRGHPAGLADFLPWAALVAPGVVLNKDGSFQRSARFRGPDLESATPAELVGVTA
CCCCHHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCCCCCHHHHHHHH
RVNNALRRLGSGWALFVEADRLPATDYPESAFPDPASALVDLERQDGFEQAGIHFESRFF
HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCEEECEEE
LTILWLPPAEKVGRAEGWLYEGKSKTGVDPWELLRGFLDRTDRILHLVEGFVPEVAWLDD
EEEEECCCHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
GETLTYLHSTVSTKRQKVRVPEIPMVLDTLLADQPLTGGLEPRLGKAHLRPLTVVGFPTA
CCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHCCEEEEEECCCC
THPGILDDLIKSTPLPDK
CCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]