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The map label for this gene is ddpB [H]

Identifier: 83592139

GI number: 83592139

Start: 955362

End: 956432

Strand: Direct

Name: ddpB [H]

Synonym: Rru_A0800

Alternate gene names: 83592139

Gene position: 955362-956432 (Clockwise)

Preceding gene: 83592138

Following gene: 83592140

Centisome position: 21.95

GC content: 65.83

Gene sequence:

>1071_bases
ATGGCCGGTCCGTTCGATCAGGGGGGAGCCGCCGTCACCGGCGGCTTTCCCTCGGCCCGGGTCGCGCGCGGCGGGGCGCG
GGGATTGGGGCTGGCCGGGCAGGTCGCCATCACCCTTCTCGGCCTCTTGCTGGTGACCTTCCTCATCGGCCGGCTGACGC
CGATCGATCCGCTGCTCGCCCTGCTTGGCGATCGCGCCAGCGCCGCCACCTACGCCGCCGCCCGCCAGCGGCTTGGCCTT
GATCTGCCGCTCTGGCGGCAGTTCGCGGTTTATGCCGGCGAAATCTTGCGCGGCAATCTCGGCCGCTCGACCCTGACCGG
GCAACCGGTGCTGGCCGATATCGCCCAGTTTTTTCCGGCGACGTTTGAGCTGGCCAGTCTGGCCATTTTTTTCGGGGTCG
TCTTTGGCGTGCCCGGCGGCGTTGTCGCCGCGACCCATAAGGGCGCATGGCCCGACCATGTTCTAAGGCTGGTCACCCTG
GTGGGCTATTCCGTGCCGATCTTCTGGCTTGGCATCGTTGGTCTGGTGGTGTTTTACGCCAAGCTCGATTGGGTCGCCGG
TCCGGGCCGCATCGATATCCTCTATCAGGATATCCCCGCCGTCACCGGGTTGATGCTTGTCGATACCGTTCTCGCCCGCT
CGCCCGAGGCCTTCCTCGACGCCTTGCGCCACTTGATCCTGCCCGCGGCCATTCTCGGCTATTACGCGGCGGCGGTGATC
GCGCGGATGACCCGGGCGGCGATGCTGGCCGAGCTCAGCCAGGACTACATCCTTACCGCCCGGGTCAAAGGCCTCGGCCG
GCGGCGGGTGATCTGGGGCCACGCCTTTCCCAACGCCCTGGTCCCCATCATCACCATCATCACCTTGTCCTATGCCTCGC
TGCTGGAAGGGGCGGTGCTGACCGAAACGATCTTCGCCTGGCCGGGGCTGGGCCTTTACATCACCCAGTCGCTGTTCAAC
GCCGATCTCACGGCGGTTCTGGGCGGGACGCTGGTGGTTGGCGTTTTGTTTATCGGCCTAAATCTGCTGGCCGATCTTTT
CTCCATTCTGGCCGATCCGAGGGTGCGATGA

Upstream 100 bases:

>100_bases
GAAGGTCGACCAGACCGCCGGACGCCAAGAGGTCACCGGCTTCGACTCGGGACCAACCGGCGATACGCTGGTTTATGCCC
GCATTCGGAAAGATTAGGCC

Downstream 100 bases:

>100_bases
CCCTGTCAGCGTGGTTGTTCACCGAGACACCGGCTTCGCGGCGGCAGGCGCGGTGGGGGGCGCTGGCGCGCGGGGGCGTG
GCGCTTCTGGGCAATCGGCT

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MAGPFDQGGAAVTGGFPSARVARGGARGLGLAGQVAITLLGLLLVTFLIGRLTPIDPLLALLGDRASAATYAAARQRLGL
DLPLWRQFAVYAGEILRGNLGRSTLTGQPVLADIAQFFPATFELASLAIFFGVVFGVPGGVVAATHKGAWPDHVLRLVTL
VGYSVPIFWLGIVGLVVFYAKLDWVAGPGRIDILYQDIPAVTGLMLVDTVLARSPEAFLDALRHLILPAAILGYYAAAVI
ARMTRAAMLAELSQDYILTARVKGLGRRRVIWGHAFPNALVPIITIITLSYASLLEGAVLTETIFAWPGLGLYITQSLFN
ADLTAVLGGTLVVGVLFIGLNLLADLFSILADPRVR

Sequences:

>Translated_356_residues
MAGPFDQGGAAVTGGFPSARVARGGARGLGLAGQVAITLLGLLLVTFLIGRLTPIDPLLALLGDRASAATYAAARQRLGL
DLPLWRQFAVYAGEILRGNLGRSTLTGQPVLADIAQFFPATFELASLAIFFGVVFGVPGGVVAATHKGAWPDHVLRLVTL
VGYSVPIFWLGIVGLVVFYAKLDWVAGPGRIDILYQDIPAVTGLMLVDTVLARSPEAFLDALRHLILPAAILGYYAAAVI
ARMTRAAMLAELSQDYILTARVKGLGRRRVIWGHAFPNALVPIITIITLSYASLLEGAVLTETIFAWPGLGLYITQSLFN
ADLTAVLGGTLVVGVLFIGLNLLADLFSILADPRVR
>Mature_355_residues
AGPFDQGGAAVTGGFPSARVARGGARGLGLAGQVAITLLGLLLVTFLIGRLTPIDPLLALLGDRASAATYAAARQRLGLD
LPLWRQFAVYAGEILRGNLGRSTLTGQPVLADIAQFFPATFELASLAIFFGVVFGVPGGVVAATHKGAWPDHVLRLVTLV
GYSVPIFWLGIVGLVVFYAKLDWVAGPGRIDILYQDIPAVTGLMLVDTVLARSPEAFLDALRHLILPAAILGYYAAAVIA
RMTRAAMLAELSQDYILTARVKGLGRRRVIWGHAFPNALVPIITIITLSYASLLEGAVLTETIFAWPGLGLYITQSLFNA
DLTAVLGGTLVVGVLFIGLNLLADLFSILADPRVR

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=315, Percent_Identity=43.8095238095238, Blast_Score=235, Evalue=3e-63,
Organism=Escherichia coli, GI1789965, Length=329, Percent_Identity=41.3373860182371, Blast_Score=234, Evalue=5e-63,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=32.2344322344322, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI1787053, Length=319, Percent_Identity=31.974921630094, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=31.6455696202532, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1787497, Length=321, Percent_Identity=28.3489096573209, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1788504, Length=287, Percent_Identity=25.7839721254355, Blast_Score=98, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37651; Mature: 37520

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGPFDQGGAAVTGGFPSARVARGGARGLGLAGQVAITLLGLLLVTFLIGRLTPIDPLLA
CCCCCCCCCCEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LLGDRASAATYAAARQRLGLDLPLWRQFAVYAGEILRGNLGRSTLTGQPVLADIAQFFPA
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCH
TFELASLAIFFGVVFGVPGGVVAATHKGAWPDHVLRLVTLVGYSVPIFWLGIVGLVVFYA
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLDWVAGPGRIDILYQDIPAVTGLMLVDTVLARSPEAFLDALRHLILPAAILGYYAAAVI
HHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARMTRAAMLAELSQDYILTARVKGLGRRRVIWGHAFPNALVPIITIITLSYASLLEGAVL
HHHHHHHHHHHHHHHHEEHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHH
TETIFAWPGLGLYITQSLFNADLTAVLGGTLVVGVLFIGLNLLADLFSILADPRVR
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AGPFDQGGAAVTGGFPSARVARGGARGLGLAGQVAITLLGLLLVTFLIGRLTPIDPLLA
CCCCCCCCCEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LLGDRASAATYAAARQRLGLDLPLWRQFAVYAGEILRGNLGRSTLTGQPVLADIAQFFPA
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCH
TFELASLAIFFGVVFGVPGGVVAATHKGAWPDHVLRLVTLVGYSVPIFWLGIVGLVVFYA
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLDWVAGPGRIDILYQDIPAVTGLMLVDTVLARSPEAFLDALRHLILPAAILGYYAAAVI
HHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARMTRAAMLAELSQDYILTARVKGLGRRRVIWGHAFPNALVPIITIITLSYASLLEGAVL
HHHHHHHHHHHHHHHHEEHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHH
TETIFAWPGLGLYITQSLFNADLTAVLGGTLVVGVLFIGLNLLADLFSILADPRVR
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]