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The map label for this gene is ddpC [H]

Identifier: 83592140

GI number: 83592140

Start: 956429

End: 957319

Strand: Direct

Name: ddpC [H]

Synonym: Rru_A0801

Alternate gene names: 83592140

Gene position: 956429-957319 (Clockwise)

Preceding gene: 83592139

Following gene: 83592141

Centisome position: 21.97

GC content: 68.24

Gene sequence:

>891_bases
ATGACCCTGTCAGCGTGGTTGTTCACCGAGACACCGGCTTCGCGGCGGCAGGCGCGGTGGGGGGCGCTGGCGCGCGGGGG
CGTGGCGCTTCTGGGCAATCGGCTGGTGTGCGGCGGTCTGGCCGTCGTCATCGCGCTGGGGGTGGTGGCGGTCTTCGCCC
CGGCCCTCGCCCCCTATGATCCGCTCGTTCAGGACCTGTCGCAGCGATTGCGCCCGCCCTCGGCGGCGCATTGGCTGGGA
ACGGACCATCTTGGCCGCGATATCTTCAGCCGGGTTCTGTGCGGAACGCCGATCACCTTGTCGATCGTCACCATCGCCGC
CCTGACCGTGCTGCCGGTCAGCCTGATCATCGGCATGGTCGCTGGGTTTTTCGGCGGGATCGTCGATGCCGTGCTGATGC
GTACGACCGACGTCTTCTTGTCGTTTCCGCTGCTGGTGCTCGCTCTGGCCTTGGCCGCCGCCCTGGGGCCCGGGCTGGTG
AACGCGGTGATCGCCATCGCCCTGACCGCCTGGCCGCCGCTCGCCCGACTGGTGCGGGCCGAAACGCGCCGTTTGAAACA
GGCCGATTTCGTCGCCGCCACCCGGCTGCAGGGCGCCTCGGCGCTGCGTCTGCTGAGCTTCGATATCCTGCCCCTGGTGC
TGCCCGCCGCCCTGACCCGGCTCAGTCTTGATCTCGCCGGCATGATTTTGATCGCCGCCAGCCTTGGATTCCTGGGGCTG
GGGGCTCAGCCGCCCTCGCCGGAATGGGGGGCGATGGTCGCCGCCGGCCGCACCTTCCTGATGGATCAGTGGTGGGTGGC
GACCCTGCCCGGCGTGGCGATCTTCATCGTCAGCTTTGCCTTCAACCTGCTTGGCGACGGCGTCAGCGAGGTTCTTGATC
CAAAGGAATGA

Upstream 100 bases:

>100_bases
TCACGGCGGTTCTGGGCGGGACGCTGGTGGTTGGCGTTTTGTTTATCGGCCTAAATCTGCTGGCCGATCTTTTCTCCATT
CTGGCCGATCCGAGGGTGCG

Downstream 100 bases:

>100_bases
CCGGTCATGAATACTCTCAGCCCTTTGCTCGATGTGCGAACCCTATCGGTGGACTTTCCAACCCGTCACGGCCTTGCCGC
CGCCCTGCGCGGGGTCTCGT

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTLSAWLFTETPASRRQARWGALARGGVALLGNRLVCGGLAVVIALGVVAVFAPALAPYDPLVQDLSQRLRPPSAAHWLG
TDHLGRDIFSRVLCGTPITLSIVTIAALTVLPVSLIIGMVAGFFGGIVDAVLMRTTDVFLSFPLLVLALALAAALGPGLV
NAVIAIALTAWPPLARLVRAETRRLKQADFVAATRLQGASALRLLSFDILPLVLPAALTRLSLDLAGMILIAASLGFLGL
GAQPPSPEWGAMVAAGRTFLMDQWWVATLPGVAIFIVSFAFNLLGDGVSEVLDPKE

Sequences:

>Translated_296_residues
MTLSAWLFTETPASRRQARWGALARGGVALLGNRLVCGGLAVVIALGVVAVFAPALAPYDPLVQDLSQRLRPPSAAHWLG
TDHLGRDIFSRVLCGTPITLSIVTIAALTVLPVSLIIGMVAGFFGGIVDAVLMRTTDVFLSFPLLVLALALAAALGPGLV
NAVIAIALTAWPPLARLVRAETRRLKQADFVAATRLQGASALRLLSFDILPLVLPAALTRLSLDLAGMILIAASLGFLGL
GAQPPSPEWGAMVAAGRTFLMDQWWVATLPGVAIFIVSFAFNLLGDGVSEVLDPKE
>Mature_295_residues
TLSAWLFTETPASRRQARWGALARGGVALLGNRLVCGGLAVVIALGVVAVFAPALAPYDPLVQDLSQRLRPPSAAHWLGT
DHLGRDIFSRVLCGTPITLSIVTIAALTVLPVSLIIGMVAGFFGGIVDAVLMRTTDVFLSFPLLVLALALAAALGPGLVN
AVIAIALTAWPPLARLVRAETRRLKQADFVAATRLQGASALRLLSFDILPLVLPAALTRLSLDLAGMILIAASLGFLGLG
AQPPSPEWGAMVAAGRTFLMDQWWVATLPGVAIFIVSFAFNLLGDGVSEVLDPKE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=295, Percent_Identity=44.7457627118644, Blast_Score=234, Evalue=4e-63,
Organism=Escherichia coli, GI1787054, Length=254, Percent_Identity=44.4881889763779, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1789889, Length=238, Percent_Identity=44.5378151260504, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1789964, Length=253, Percent_Identity=42.6877470355731, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1787549, Length=262, Percent_Identity=37.4045801526718, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787498, Length=291, Percent_Identity=30.9278350515464, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=30.5309734513274, Blast_Score=95, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31026; Mature: 30895

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSAWLFTETPASRRQARWGALARGGVALLGNRLVCGGLAVVIALGVVAVFAPALAPYD
CCCEEEEEECCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
PLVQDLSQRLRPPSAAHWLGTDHLGRDIFSRVLCGTPITLSIVTIAALTVLPVSLIIGMV
HHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AGFFGGIVDAVLMRTTDVFLSFPLLVLALALAAALGPGLVNAVIAIALTAWPPLARLVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHH
ETRRLKQADFVAATRLQGASALRLLSFDILPLVLPAALTRLSLDLAGMILIAASLGFLGL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GAQPPSPEWGAMVAAGRTFLMDQWWVATLPGVAIFIVSFAFNLLGDGVSEVLDPKE
CCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure 
TLSAWLFTETPASRRQARWGALARGGVALLGNRLVCGGLAVVIALGVVAVFAPALAPYD
CCEEEEEECCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
PLVQDLSQRLRPPSAAHWLGTDHLGRDIFSRVLCGTPITLSIVTIAALTVLPVSLIIGMV
HHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AGFFGGIVDAVLMRTTDVFLSFPLLVLALALAAALGPGLVNAVIAIALTAWPPLARLVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHH
ETRRLKQADFVAATRLQGASALRLLSFDILPLVLPAALTRLSLDLAGMILIAASLGFLGL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GAQPPSPEWGAMVAAGRTFLMDQWWVATLPGVAIFIVSFAFNLLGDGVSEVLDPKE
CCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]