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The map label for this gene is ddpA [H]

Identifier: 83592138

GI number: 83592138

Start: 953763

End: 955358

Strand: Direct

Name: ddpA [H]

Synonym: Rru_A0799

Alternate gene names: 83592138

Gene position: 953763-955358 (Clockwise)

Preceding gene: 83592130

Following gene: 83592139

Centisome position: 21.91

GC content: 61.22

Gene sequence:

>1596_bases
ATGGGAACCATGCGGTGGGTGTTGCTCGCGGCTTCGGCCGCTTTGTTGATGGCGCCGGCGTCTTTCGCCGTCGCCGGTAC
GCCAAAAGACACCTTGGTTTTCGCCCGTAACATCGACGAGATCATCTCGCTCGATCCGGCGGAAAACTTCGAAAGCGTCG
GCGGAGAGACCCTTAACAATCTTTACACCCGCCTTGTGACCTTCGCGCCGGGGGATTTCGGCACGCTGGTCGGCGGAGCG
GCCGAAAGCTGGACGGTCAGCGAGGATGGCAAGGTCTTCACCTTCAAGATCCGTCCGGGTCTGACCTTCCCCTCGGGCCG
TCCGCTGCGCGCCCAGGACGCCGCCTTTTCCTTGCAACGCGCCGTTATCTTGGAAAAGACCCCGGCGTTCATCCTGACCC
AGTTCGGCTGGACCAAGGACAACGTCAAAGACCTGATCCAGGCTCCCTCCGACGATACGCTGCGGCTGACCCTTCCCGAG
GAACGGGCGCCCAGTCTGGTGATCAATTCCCTGACCGCCACCGTCGCCTCGGTGGTCGACGCCGAGGAAGCCTTGGCCCA
CGCCAAAGATAGTGATCTGGGGTCGGAGTGGCTGAAGACCACCGCGGCGGGGACGGGGGCCTATCGCCTGATCGAGTGGA
AGCCCAAGCAGGCGCTAAGCTTTGAGGCCAACCCCAAGTATTACCTTGGCGAGGTCCCCTTGAAGCGGGTGATCGTCCGC
CATATTCCCGATCCATCGAGCCAGCGGTTGCTGCTTGAAAAGGGCGATGTCGATATCGCCCGCGACCTCACGCCCGATCA
GATCGCCACCTTGGAAGGCAAAAAAAACTTCCATATCTGGACCGATCCGAAGCAGACGGTCTATTACCTGAACCTCAACC
TGAAAAACCCCGAGCTGGCCAAACCCAAGGTGCGCGAGGCGATCCGCTGGCTGGTCGATTACAAGGGTCTGGCCGAGACG
GTTTTGAAGGGACGGGTCGAGGTTCATCAGGCGATCATCGGCAAGGGAACCTTCGGCTCGCTCGACGAAACCCCCTTCCG
CCTCGACGTGGCCAAGGCCAAGGCCCTGCTCGCCGAAGCCGGGGTGGCCGACGGCTTCAAGATCACCATCGACAGCGCCA
ATTCCCCACCGGCCTCCGATATCGCCCAGTCCCTGCAATCGACCTTCGCCCAGGCTGGCATCACCCTTGAGATCATCCAG
AGCGATCGCAAGCAGTTGCTGACCAAATACCGGGCGAGGGCGCACGATATCGTGATCATCACCTGGGAACCCGATTACCT
CGACCCCCATTCCTCGACGGATTATTTCACGCGCAATACGGATAATTCCGATAGCGCCAAGTCGAAGACCCTGGCGTGGC
GGGCGTCGTGGGATATCCCGGAGCTGACCCGCGAGACGGACAAGGCGGTGCTGGAGATCGATACCGAGAAGCGCAAGGCC
GCCTATCTCGCCTTGCAACGCGAAATCCAGACCGACTCGCCGATCGTCGTGCTCTTCCAGAAGGTCGACCAGACCGCCGG
ACGCCAAGAGGTCACCGGCTTCGACTCGGGACCAACCGGCGATACGCTGGTTTATGCCCGCATTCGGAAAGATTAG

Upstream 100 bases:

>100_bases
CGGTGCGCCCGTCTTCGAGGATCCTTGGCACGTTTGCGGGCCGTCCCCGTTGGCCGGTCCGCTCAACCGCGCGCCCTTGG
GGGCCGCACCGGAGGGGAAA

Downstream 100 bases:

>100_bases
GCCATGGCCGGTCCGTTCGATCAGGGGGGAGCCGCCGTCACCGGCGGCTTTCCCTCGGCCCGGGTCGCGCGCGGCGGGGC
GCGGGGATTGGGGCTGGCCG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 530

Protein sequence:

>531_residues
MGTMRWVLLAASAALLMAPASFAVAGTPKDTLVFARNIDEIISLDPAENFESVGGETLNNLYTRLVTFAPGDFGTLVGGA
AESWTVSEDGKVFTFKIRPGLTFPSGRPLRAQDAAFSLQRAVILEKTPAFILTQFGWTKDNVKDLIQAPSDDTLRLTLPE
ERAPSLVINSLTATVASVVDAEEALAHAKDSDLGSEWLKTTAAGTGAYRLIEWKPKQALSFEANPKYYLGEVPLKRVIVR
HIPDPSSQRLLLEKGDVDIARDLTPDQIATLEGKKNFHIWTDPKQTVYYLNLNLKNPELAKPKVREAIRWLVDYKGLAET
VLKGRVEVHQAIIGKGTFGSLDETPFRLDVAKAKALLAEAGVADGFKITIDSANSPPASDIAQSLQSTFAQAGITLEIIQ
SDRKQLLTKYRARAHDIVIITWEPDYLDPHSSTDYFTRNTDNSDSAKSKTLAWRASWDIPELTRETDKAVLEIDTEKRKA
AYLALQREIQTDSPIVVLFQKVDQTAGRQEVTGFDSGPTGDTLVYARIRKD

Sequences:

>Translated_531_residues
MGTMRWVLLAASAALLMAPASFAVAGTPKDTLVFARNIDEIISLDPAENFESVGGETLNNLYTRLVTFAPGDFGTLVGGA
AESWTVSEDGKVFTFKIRPGLTFPSGRPLRAQDAAFSLQRAVILEKTPAFILTQFGWTKDNVKDLIQAPSDDTLRLTLPE
ERAPSLVINSLTATVASVVDAEEALAHAKDSDLGSEWLKTTAAGTGAYRLIEWKPKQALSFEANPKYYLGEVPLKRVIVR
HIPDPSSQRLLLEKGDVDIARDLTPDQIATLEGKKNFHIWTDPKQTVYYLNLNLKNPELAKPKVREAIRWLVDYKGLAET
VLKGRVEVHQAIIGKGTFGSLDETPFRLDVAKAKALLAEAGVADGFKITIDSANSPPASDIAQSLQSTFAQAGITLEIIQ
SDRKQLLTKYRARAHDIVIITWEPDYLDPHSSTDYFTRNTDNSDSAKSKTLAWRASWDIPELTRETDKAVLEIDTEKRKA
AYLALQREIQTDSPIVVLFQKVDQTAGRQEVTGFDSGPTGDTLVYARIRKD
>Mature_530_residues
GTMRWVLLAASAALLMAPASFAVAGTPKDTLVFARNIDEIISLDPAENFESVGGETLNNLYTRLVTFAPGDFGTLVGGAA
ESWTVSEDGKVFTFKIRPGLTFPSGRPLRAQDAAFSLQRAVILEKTPAFILTQFGWTKDNVKDLIQAPSDDTLRLTLPEE
RAPSLVINSLTATVASVVDAEEALAHAKDSDLGSEWLKTTAAGTGAYRLIEWKPKQALSFEANPKYYLGEVPLKRVIVRH
IPDPSSQRLLLEKGDVDIARDLTPDQIATLEGKKNFHIWTDPKQTVYYLNLNLKNPELAKPKVREAIRWLVDYKGLAETV
LKGRVEVHQAIIGKGTFGSLDETPFRLDVAKAKALLAEAGVADGFKITIDSANSPPASDIAQSLQSTFAQAGITLEIIQS
DRKQLLTKYRARAHDIVIITWEPDYLDPHSSTDYFTRNTDNSDSAKSKTLAWRASWDIPELTRETDKAVLEIDTEKRKAA
YLALQREIQTDSPIVVLFQKVDQTAGRQEVTGFDSGPTGDTLVYARIRKD

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=502, Percent_Identity=29.8804780876494, Blast_Score=176, Evalue=5e-45,
Organism=Escherichia coli, GI1789966, Length=477, Percent_Identity=25.3668763102725, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787052, Length=395, Percent_Identity=25.5696202531646, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1789887, Length=512, Percent_Identity=26.171875, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787551, Length=505, Percent_Identity=23.5643564356436, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787495, Length=548, Percent_Identity=24.2700729927007, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58500; Mature: 58369

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTMRWVLLAASAALLMAPASFAVAGTPKDTLVFARNIDEIISLDPAENFESVGGETLNN
CCCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCHHHHHCCCCCHHHHHCCHHHHHH
LYTRLVTFAPGDFGTLVGGAAESWTVSEDGKVFTFKIRPGLTFPSGRPLRAQDAAFSLQR
HHHHHHHCCCCCHHHHHCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
AVILEKTPAFILTQFGWTKDNVKDLIQAPSDDTLRLTLPEERAPSLVINSLTATVASVVD
HHEEECCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
AEEALAHAKDSDLGSEWLKTTAAGTGAYRLIEWKPKQALSFEANPKYYLGEVPLKRVIVR
HHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCEEECCCCHHHHHHH
HIPDPSSQRLLLEKGDVDIARDLTPDQIATLEGKKNFHIWTDPKQTVYYLNLNLKNPELA
HCCCCCCCEEEEECCCCCEECCCCCHHEEEECCCCCEEEEECCCCEEEEEEEEECCCCCC
KPKVREAIRWLVDYKGLAETVLKGRVEVHQAIIGKGTFGSLDETPFRLDVAKAKALLAEA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHC
GVADGFKITIDSANSPPASDIAQSLQSTFAQAGITLEIIQSDRKQLLTKYRARAHDIVII
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCEEEEE
TWEPDYLDPHSSTDYFTRNTDNSDSAKSKTLAWRASWDIPELTRETDKAVLEIDTEKRKA
EECCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCCHHHHHHCCCEEEEECCHHHHH
AYLALQREIQTDSPIVVLFQKVDQTAGRQEVTGFDSGPTGDTLVYARIRKD
HHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
GTMRWVLLAASAALLMAPASFAVAGTPKDTLVFARNIDEIISLDPAENFESVGGETLNN
CCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCHHHHHCCCCCHHHHHCCHHHHHH
LYTRLVTFAPGDFGTLVGGAAESWTVSEDGKVFTFKIRPGLTFPSGRPLRAQDAAFSLQR
HHHHHHHCCCCCHHHHHCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
AVILEKTPAFILTQFGWTKDNVKDLIQAPSDDTLRLTLPEERAPSLVINSLTATVASVVD
HHEEECCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
AEEALAHAKDSDLGSEWLKTTAAGTGAYRLIEWKPKQALSFEANPKYYLGEVPLKRVIVR
HHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCEEECCCCHHHHHHH
HIPDPSSQRLLLEKGDVDIARDLTPDQIATLEGKKNFHIWTDPKQTVYYLNLNLKNPELA
HCCCCCCCEEEEECCCCCEECCCCCHHEEEECCCCCEEEEECCCCEEEEEEEEECCCCCC
KPKVREAIRWLVDYKGLAETVLKGRVEVHQAIIGKGTFGSLDETPFRLDVAKAKALLAEA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHC
GVADGFKITIDSANSPPASDIAQSLQSTFAQAGITLEIIQSDRKQLLTKYRARAHDIVII
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCEEEEE
TWEPDYLDPHSSTDYFTRNTDNSDSAKSKTLAWRASWDIPELTRETDKAVLEIDTEKRKA
EECCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCCHHHHHHCCCEEEEECCHHHHH
AYLALQREIQTDSPIVVLFQKVDQTAGRQEVTGFDSGPTGDTLVYARIRKD
HHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]