Click here to switch to the map view.

The map label for this gene is plpC [H]

Identifier: 83592130

GI number: 83592130

Start: 944261

End: 945049

Strand: Direct

Name: plpC [H]

Synonym: Rru_A0791

Alternate gene names: 83592130

Gene position: 944261-945049 (Clockwise)

Preceding gene: 83592129

Following gene: 83592138

Centisome position: 21.69

GC content: 60.71

Gene sequence:

>789_bases
ATGAAGCCGTTTTTCAGGGGCGCCCTGGTGGCGCTCGCCCTTGCCGCGGGGGGATCGGCCGCCCTGGCCGCCGAACCGTT
GAAGGTGGGCGTTTCCACCGGGCCTTATGCCGAGATCCTTGAATACGTCGCCGATCTCTATCAGAAGCAGGGCGGCGGGC
CAGTCAAGGTGGTTGAATTCGCCGATTACACCTTGCCCAACGCGGCGCTGGCCCAGGGTGATATCGATTTCAACAATTTC
CAGCACAAGCCCTATCTCGACAATCAGATCAAGACGCGGGGCTATGATCTGGTGCCGATCGAGAAAAGCATCGTCGTGCC
GCTTGGGCTTTATTCCAAGGGTTTGAAATCGGTGGCTGATCTGAAGGACGGCGCCCAGGTGGCCATCCCCAATGATCCGG
CCAATGGCTCGCGCGCCCTGTTGCTGCTCCAGCAGGCCGGGTTGCTCACCATCGATCCCAAGGCCGGCATCACCGCGACT
CCGGCCGAGGTGATCGCCAATCCCAAGCACCTGAAGATCAAGGAAATCGACGCCGCCCAATTGCCGCGTTCGCTTGATGA
TGTCGATCTGGCGGCGGTGACGTTGAATTACGCGGTGGCCGGTGGCCTCAGCCCTAAGCAAGCCCTGGTTCTGGAAGGCG
CCGATACGCCCTGGGGGCTGTGGTTCGTCGCCCAAAGCGCCCATAAGGACGATCCCAGGATCTTGAAATACATCGCCCTT
TACCGCAGCCCCGAGGTGAAGGACTTCATCCTCAAGCGCTTCGACGGCACGATCATTCCGACGTGGTGA

Upstream 100 bases:

>100_bases
CCCATAAGGCCAAGCGCATCGACGACCGCCGTACCGGGGTGTGGACGGCCTGAGCCCGGCCATTCCCGTTTCTCCCTAAA
AAACCTTTGGAGAAAAAGCC

Downstream 100 bases:

>100_bases
GGCGACTTCGGCCAAAAGGAAAAGGGCCCGGACGGGGTGGCGTCCGGGCCCTTTGATTTACCGGGAAAGCTGGGCGCCGG
CCTGGGCCCGCCAGGGCCCC

Product: NLPA lipoprotein

Products: NA

Alternate protein names: PLP3 [H]

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKPFFRGALVALALAAGGSAALAAEPLKVGVSTGPYAEILEYVADLYQKQGGGPVKVVEFADYTLPNAALAQGDIDFNNF
QHKPYLDNQIKTRGYDLVPIEKSIVVPLGLYSKGLKSVADLKDGAQVAIPNDPANGSRALLLLQQAGLLTIDPKAGITAT
PAEVIANPKHLKIKEIDAAQLPRSLDDVDLAAVTLNYAVAGGLSPKQALVLEGADTPWGLWFVAQSAHKDDPRILKYIAL
YRSPEVKDFILKRFDGTIIPTW

Sequences:

>Translated_262_residues
MKPFFRGALVALALAAGGSAALAAEPLKVGVSTGPYAEILEYVADLYQKQGGGPVKVVEFADYTLPNAALAQGDIDFNNF
QHKPYLDNQIKTRGYDLVPIEKSIVVPLGLYSKGLKSVADLKDGAQVAIPNDPANGSRALLLLQQAGLLTIDPKAGITAT
PAEVIANPKHLKIKEIDAAQLPRSLDDVDLAAVTLNYAVAGGLSPKQALVLEGADTPWGLWFVAQSAHKDDPRILKYIAL
YRSPEVKDFILKRFDGTIIPTW
>Mature_262_residues
MKPFFRGALVALALAAGGSAALAAEPLKVGVSTGPYAEILEYVADLYQKQGGGPVKVVEFADYTLPNAALAQGDIDFNNF
QHKPYLDNQIKTRGYDLVPIEKSIVVPLGLYSKGLKSVADLKDGAQVAIPNDPANGSRALLLLQQAGLLTIDPKAGITAT
PAEVIANPKHLKIKEIDAAQLPRSLDDVDLAAVTLNYAVAGGLSPKQALVLEGADTPWGLWFVAQSAHKDDPRILKYIAL
YRSPEVKDFILKRFDGTIIPTW

Specific function: Unknown

COG id: COG1464

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface antigen

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpA lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786396, Length=260, Percent_Identity=42.6923076923077, Blast_Score=200, Evalue=8e-53,
Organism=Escherichia coli, GI1790093, Length=242, Percent_Identity=38.4297520661157, Blast_Score=173, Evalue=9e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004872
- InterPro:   IPR004478 [H]

Pfam domain/function: PF03180 Lipoprotein_9 [H]

EC number: NA

Molecular weight: Translated: 28041; Mature: 28041

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPFFRGALVALALAAGGSAALAAEPLKVGVSTGPYAEILEYVADLYQKQGGGPVKVVEF
CCCHHHHHHHHHHHHCCCCCEEECCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
ADYTLPNAALAQGDIDFNNFQHKPYLDNQIKTRGYDLVPIEKSIVVPLGLYSKGLKSVAD
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCEEEEECHHHHHHHHHHH
LKDGAQVAIPNDPANGSRALLLLQQAGLLTIDPKAGITATPAEVIANPKHLKIKEIDAAQ
HCCCCEEEECCCCCCCCEEEEEEECCCEEEECCCCCCCCCCHHHHCCCCCEEEEECCHHH
LPRSLDDVDLAAVTLNYAVAGGLSPKQALVLEGADTPWGLWFVAQSAHKDDPRILKYIAL
CCCCCCCCCEEHEEEEHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHH
YRSPEVKDFILKRFDGTIIPTW
HCCCCHHHHHHHHCCCCEECCC
>Mature Secondary Structure
MKPFFRGALVALALAAGGSAALAAEPLKVGVSTGPYAEILEYVADLYQKQGGGPVKVVEF
CCCHHHHHHHHHHHHCCCCCEEECCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
ADYTLPNAALAQGDIDFNNFQHKPYLDNQIKTRGYDLVPIEKSIVVPLGLYSKGLKSVAD
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCEEEEECHHHHHHHHHHH
LKDGAQVAIPNDPANGSRALLLLQQAGLLTIDPKAGITATPAEVIANPKHLKIKEIDAAQ
HCCCCEEEECCCCCCCCEEEEEEECCCEEEECCCCCCCCCCHHHHCCCCCEEEEECCHHH
LPRSLDDVDLAAVTLNYAVAGGLSPKQALVLEGADTPWGLWFVAQSAHKDDPRILKYIAL
CCCCCCCCCEEHEEEEHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHH
YRSPEVKDFILKRFDGTIIPTW
HCCCCHHHHHHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8335249; 8406866 [H]