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The map label for this gene is yhdY [H]

Identifier: 83592120

GI number: 83592120

Start: 933308

End: 934411

Strand: Direct

Name: yhdY [H]

Synonym: Rru_A0781

Alternate gene names: 83592120

Gene position: 933308-934411 (Clockwise)

Preceding gene: 83592119

Following gene: 83592121

Centisome position: 21.44

GC content: 68.66

Gene sequence:

>1104_bases
ATGACCCTGATCGCCGATACCCTGGACAGCCCGGCGCCGCCCCGGCGGGCGCCCGATACCAGCCTGTCGGGCTGGGCGCG
CTGGCGCGAGGGATTGTTTGGCTCGCTTGGCAATACGTTGCTCACCTTGCTGGTTCTCGCCGTCCTCGCCTGGGTGGTGC
CGCCTTTGGTGCGATGGGCGGTGATCGACGCGGTGTGGAGCGGACCGGCCGAGGCCTGCGCCGCGCGTTCGGGCGCCTGC
TGGGCCTTCCTGGCCGAGAAGACCCGGTTCATCCTGTTTGGGCTTTATCCGGCGGCGGCCCAGGGCGCGCCGGCCCTGGC
CTCGCTGCTGCTCGGCGCGCTGCTGGTGGCCAGTGGCCTGCCCCGGCTGTGGGGGCGAAACCTGCTGGTCGCCTGGATCC
TGGTGCCGCTGCTTGCCGTGCTGGTGATGGCCGGGGTGTTTTCCGGTCTGCGGGTCGGCACCGATCAATGGGGCGGCCTG
CCGTTGACCTTGCTGCTGACCACGGTGGCGATGGGCGGGGCCTTTCCGCTGGCGGTGGTGCTGGCCCTGGCCCGGCGCTC
GCGGTTCCGGCTGTTTCGCCTAATGGCGGTCTGCGTCATCGAAGGGGTGCGCGGCGTGCCGCTGATCACCGTGTTGTATG
GGGCGATTTTGCTGGTTCCCCTGATGCTGCCCGCTGGCACGGCGATCGACAAGCTGCTGCGCGCCCAGGGCGCGATCTTG
CTGTTCACCGCCAGCTATCTCGCCGAGATCATCCGCGCCGGCCTCCAGGCCATCCCGCCCGGACAATACGAGGCCGCCCG
CTCGCTTGGCCTGGGCTATGGCTTGACCATGCGGTTGGTGGTGCTGCCCCAGGCGCTGCGGTTGGTCATCCCCTCGATCG
TCACCCTGGCGATCGGCATCCTTCAGGATACCACCCTGGTCGCCGTCATCGGCATCCACGACCTGTTGAGCGCCTCGAAG
CTGGCGGCCACCGATCCCGATTGGCTGGGCTTTTATACCGAGGGCTTCTGCCTGGTGGCGACGCTATACTTCGCGCTCTG
CTTCGCCGCCTCGCGCTACAGCCTGTGGCTGGAACGCTACCTGGCAAGGGGCCAAGGGTACTGA

Upstream 100 bases:

>100_bases
TGTTCGAGGCGATCGCCCTGATGATGGCGGTGTATCTGACCATCAGCCTGACGGTCTCGGCGGCGCTGAATTTCTACAAC
CATCGTTTGAGTCTGGGCCG

Downstream 100 bases:

>100_bases
GCGGCGGCGGGCATTGGTTTCACGAATTATCCACCGTGAAACGATCTGGTAATCTTGCTTTCGGGAGAGAATGGCCCAAG
TGCCAGAAGATCGGGTTCTA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTLIADTLDSPAPPRRAPDTSLSGWARWREGLFGSLGNTLLTLLVLAVLAWVVPPLVRWAVIDAVWSGPAEACAARSGAC
WAFLAEKTRFILFGLYPAAAQGAPALASLLLGALLVASGLPRLWGRNLLVAWILVPLLAVLVMAGVFSGLRVGTDQWGGL
PLTLLLTTVAMGGAFPLAVVLALARRSRFRLFRLMAVCVIEGVRGVPLITVLYGAILLVPLMLPAGTAIDKLLRAQGAIL
LFTASYLAEIIRAGLQAIPPGQYEAARSLGLGYGLTMRLVVLPQALRLVIPSIVTLAIGILQDTTLVAVIGIHDLLSASK
LAATDPDWLGFYTEGFCLVATLYFALCFAASRYSLWLERYLARGQGY

Sequences:

>Translated_367_residues
MTLIADTLDSPAPPRRAPDTSLSGWARWREGLFGSLGNTLLTLLVLAVLAWVVPPLVRWAVIDAVWSGPAEACAARSGAC
WAFLAEKTRFILFGLYPAAAQGAPALASLLLGALLVASGLPRLWGRNLLVAWILVPLLAVLVMAGVFSGLRVGTDQWGGL
PLTLLLTTVAMGGAFPLAVVLALARRSRFRLFRLMAVCVIEGVRGVPLITVLYGAILLVPLMLPAGTAIDKLLRAQGAIL
LFTASYLAEIIRAGLQAIPPGQYEAARSLGLGYGLTMRLVVLPQALRLVIPSIVTLAIGILQDTTLVAVIGIHDLLSASK
LAATDPDWLGFYTEGFCLVATLYFALCFAASRYSLWLERYLARGQGY
>Mature_366_residues
TLIADTLDSPAPPRRAPDTSLSGWARWREGLFGSLGNTLLTLLVLAVLAWVVPPLVRWAVIDAVWSGPAEACAARSGACW
AFLAEKTRFILFGLYPAAAQGAPALASLLLGALLVASGLPRLWGRNLLVAWILVPLLAVLVMAGVFSGLRVGTDQWGGLP
LTLLLTTVAMGGAFPLAVVLALARRSRFRLFRLMAVCVIEGVRGVPLITVLYGAILLVPLMLPAGTAIDKLLRAQGAILL
FTASYLAEIIRAGLQAIPPGQYEAARSLGLGYGLTMRLVVLPQALRLVIPSIVTLAIGILQDTTLVAVIGIHDLLSASKL
AATDPDWLGFYTEGFCLVATLYFALCFAASRYSLWLERYLARGQGY

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=360, Percent_Identity=43.6111111111111, Blast_Score=283, Evalue=1e-77,
Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=33.1730769230769, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI48994930, Length=114, Percent_Identity=39.4736842105263, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788226, Length=156, Percent_Identity=35.2564102564103, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786874, Length=169, Percent_Identity=27.2189349112426, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788646, Length=201, Percent_Identity=28.8557213930348, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 39100; Mature: 38969

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLIADTLDSPAPPRRAPDTSLSGWARWREGLFGSLGNTLLTLLVLAVLAWVVPPLVRWA
CCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIDAVWSGPAEACAARSGACWAFLAEKTRFILFGLYPAAAQGAPALASLLLGALLVASGL
HHHHHHCCHHHHHHCCCCCHHHHHHHCCCEEEEECCHHHCCCCHHHHHHHHHHHHHHCCC
PRLWGRNLLVAWILVPLLAVLVMAGVFSGLRVGTDQWGGLPLTLLLTTVAMGGAFPLAVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
LALARRSRFRLFRLMAVCVIEGVRGVPLITVLYGAILLVPLMLPAGTAIDKLLRAQGAIL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCE
LFTASYLAEIIRAGLQAIPPGQYEAARSLGLGYGLTMRLVVLPQALRLVIPSIVTLAIGI
EHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQDTTLVAVIGIHDLLSASKLAATDPDWLGFYTEGFCLVATLYFALCFAASRYSLWLERY
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARGQGY
HHCCCCC
>Mature Secondary Structure 
TLIADTLDSPAPPRRAPDTSLSGWARWREGLFGSLGNTLLTLLVLAVLAWVVPPLVRWA
CEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIDAVWSGPAEACAARSGACWAFLAEKTRFILFGLYPAAAQGAPALASLLLGALLVASGL
HHHHHHCCHHHHHHCCCCCHHHHHHHCCCEEEEECCHHHCCCCHHHHHHHHHHHHHHCCC
PRLWGRNLLVAWILVPLLAVLVMAGVFSGLRVGTDQWGGLPLTLLLTTVAMGGAFPLAVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
LALARRSRFRLFRLMAVCVIEGVRGVPLITVLYGAILLVPLMLPAGTAIDKLLRAQGAIL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCE
LFTASYLAEIIRAGLQAIPPGQYEAARSLGLGYGLTMRLVVLPQALRLVIPSIVTLAIGI
EHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQDTTLVAVIGIHDLLSASKLAATDPDWLGFYTEGFCLVATLYFALCFAASRYSLWLERY
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARGQGY
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]