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The map label for this gene is yhdX [H]

Identifier: 83592119

GI number: 83592119

Start: 932148

End: 933311

Strand: Direct

Name: yhdX [H]

Synonym: Rru_A0780

Alternate gene names: 83592119

Gene position: 932148-933311 (Clockwise)

Preceding gene: 83592118

Following gene: 83592120

Centisome position: 21.41

GC content: 65.89

Gene sequence:

>1164_bases
ATGCGCGCCCTCGGTCGCAAGATAACCTGGATATTGGCCGCTTGGTGGGGCGAGCGGCCCTTGTCCCAACTCGCGGTGTT
GCTCGGCGTCTTCGCCCTGTTCTCGGTCCTGGGGGCGAATACGGTCGACAACCTTGGGCGGCTTGGCATCACGGTCGGCT
TTGGCTATCTCGACCACCCGGCGAATTTCGAGATCGGCGAATCCCTGGTGGCCTATACCTCGGGTGACAGCTATGCCCGG
GCCCTGGGGGTGGGGATCCTCAATACCGCCCTGGTGTCGATCATCGGCTGCCTGCTGGCCACCCTTCTGGGCGTCGCCCT
GGGCATCGGCCGGCTGTCGGCCAATCTGCTGATCTCGCGCGCCGTTCAGCTTTATGTCGAGGTCATCCGCAATACGCCGC
TGCTGCTTCAGCTTTTCTTCTGGAGCGCCACCATCCACGCCCTTCCCGGGCCGCGTCAGGCCTTCGAACCGCTGACCGGC
GTGTTCCTGACCAATCGCGGCCTTTATATGCCGGCTCTGGCGATGGACGGCGCGGCGGTATTTTCCCTGCTGCTGCTGGG
CGGCGGCGCGCTGGCCGGCGTGGTGCGGATCCTGGTCCATGAGCGGCGCCACGGCCCGATGGAGCGGGCGGCCAAAACCG
CCCTTCTGGGGGCGGTGGCGGTCTTGCTGCTCGGCGTTCTGGCACTGTGCCTCGGGGGGGCGGTCTCCGTCGAGCCGCCC
CGGCTTGGCGGCTTCAACATCACTGGCGGCTGGGTCCTGTCGCCGGAATTCCTGGCCCTTCTTGTCGGGCTGGTGATCAA
CGCCAGCGCCGTCATCTGCGAAATCGTCCGCAGCGGCATCGAAGCGGTGCCGGAAGGCCAGTGGGAGGCGGCGCGGTCGC
TGGGCTTGACGCGGGGGCGCACGCTGCGCCTCGTCGTGCTGCCCCAGGCCCTGCGCGTCGTCATCCCCCTGATGACCTCG
AGCTACCTCAGCCTGACCAAGAATTCCAGTCTGGCGGTGGCCATCGGCTTTCCCGATCTGGTCAGCGTCGTCAATACCTC
GGCCAATCAGACCGGTCATGTGTTCGAGGCGATCGCCCTGATGATGGCGGTGTATCTGACCATCAGCCTGACGGTCTCGG
CGGCGCTGAATTTCTACAACCATCGTTTGAGTCTGGGCCGATGA

Upstream 100 bases:

>100_bases
ACGCTCGGTCGGCAAGGCCAGCAAGCTCGGCTTCGAACGGGGCTATAACCAGCCCTGGACCCAAGGCGGCTTGCTGTATT
CGCCGCCGTTCCGCTGATCC

Downstream 100 bases:

>100_bases
CCCTGATCGCCGATACCCTGGACAGCCCGGCGCCGCCCCGGCGGGCGCCCGATACCAGCCTGTCGGGCTGGGCGCGCTGG
CGCGAGGGATTGTTTGGCTC

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MRALGRKITWILAAWWGERPLSQLAVLLGVFALFSVLGANTVDNLGRLGITVGFGYLDHPANFEIGESLVAYTSGDSYAR
ALGVGILNTALVSIIGCLLATLLGVALGIGRLSANLLISRAVQLYVEVIRNTPLLLQLFFWSATIHALPGPRQAFEPLTG
VFLTNRGLYMPALAMDGAAVFSLLLLGGGALAGVVRILVHERRHGPMERAAKTALLGAVAVLLLGVLALCLGGAVSVEPP
RLGGFNITGGWVLSPEFLALLVGLVINASAVICEIVRSGIEAVPEGQWEAARSLGLTRGRTLRLVVLPQALRVVIPLMTS
SYLSLTKNSSLAVAIGFPDLVSVVNTSANQTGHVFEAIALMMAVYLTISLTVSAALNFYNHRLSLGR

Sequences:

>Translated_387_residues
MRALGRKITWILAAWWGERPLSQLAVLLGVFALFSVLGANTVDNLGRLGITVGFGYLDHPANFEIGESLVAYTSGDSYAR
ALGVGILNTALVSIIGCLLATLLGVALGIGRLSANLLISRAVQLYVEVIRNTPLLLQLFFWSATIHALPGPRQAFEPLTG
VFLTNRGLYMPALAMDGAAVFSLLLLGGGALAGVVRILVHERRHGPMERAAKTALLGAVAVLLLGVLALCLGGAVSVEPP
RLGGFNITGGWVLSPEFLALLVGLVINASAVICEIVRSGIEAVPEGQWEAARSLGLTRGRTLRLVVLPQALRVVIPLMTS
SYLSLTKNSSLAVAIGFPDLVSVVNTSANQTGHVFEAIALMMAVYLTISLTVSAALNFYNHRLSLGR
>Mature_387_residues
MRALGRKITWILAAWWGERPLSQLAVLLGVFALFSVLGANTVDNLGRLGITVGFGYLDHPANFEIGESLVAYTSGDSYAR
ALGVGILNTALVSIIGCLLATLLGVALGIGRLSANLLISRAVQLYVEVIRNTPLLLQLFFWSATIHALPGPRQAFEPLTG
VFLTNRGLYMPALAMDGAAVFSLLLLGGGALAGVVRILVHERRHGPMERAAKTALLGAVAVLLLGVLALCLGGAVSVEPP
RLGGFNITGGWVLSPEFLALLVGLVINASAVICEIVRSGIEAVPEGQWEAARSLGLTRGRTLRLVVLPQALRVVIPLMTS
SYLSLTKNSSLAVAIGFPDLVSVVNTSANQTGHVFEAIALMMAVYLTISLTVSAALNFYNHRLSLGR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=354, Percent_Identity=47.1751412429379, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI87082239, Length=135, Percent_Identity=36.2962962962963, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788226, Length=124, Percent_Identity=33.8709677419355, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1786874, Length=129, Percent_Identity=31.7829457364341, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1786873, Length=134, Percent_Identity=29.8507462686567, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788645, Length=109, Percent_Identity=30.2752293577982, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787030, Length=129, Percent_Identity=31.0077519379845, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787087, Length=139, Percent_Identity=29.4964028776978, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40835; Mature: 40835

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALGRKITWILAAWWGERPLSQLAVLLGVFALFSVLGANTVDNLGRLGITVGFGYLDHP
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCC
ANFEIGESLVAYTSGDSYARALGVGILNTALVSIIGCLLATLLGVALGIGRLSANLLISR
CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVQLYVEVIRNTPLLLQLFFWSATIHALPGPRQAFEPLTGVFLTNRGLYMPALAMDGAAV
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHH
FSLLLLGGGALAGVVRILVHERRHGPMERAAKTALLGAVAVLLLGVLALCLGGAVSVEPP
HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RLGGFNITGGWVLSPEFLALLVGLVINASAVICEIVRSGIEAVPEGQWEAARSLGLTRGR
CCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
TLRLVVLPQALRVVIPLMTSSYLSLTKNSSLAVAIGFPDLVSVVNTSANQTGHVFEAIAL
EEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCHHHHHHHHH
MMAVYLTISLTVSAALNFYNHRLSLGR
HHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRALGRKITWILAAWWGERPLSQLAVLLGVFALFSVLGANTVDNLGRLGITVGFGYLDHP
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCC
ANFEIGESLVAYTSGDSYARALGVGILNTALVSIIGCLLATLLGVALGIGRLSANLLISR
CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVQLYVEVIRNTPLLLQLFFWSATIHALPGPRQAFEPLTGVFLTNRGLYMPALAMDGAAV
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHH
FSLLLLGGGALAGVVRILVHERRHGPMERAAKTALLGAVAVLLLGVLALCLGGAVSVEPP
HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RLGGFNITGGWVLSPEFLALLVGLVINASAVICEIVRSGIEAVPEGQWEAARSLGLTRGR
CCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
TLRLVVLPQALRVVIPLMTSSYLSLTKNSSLAVAIGFPDLVSVVNTSANQTGHVFEAIAL
EEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCHHHHHHHHH
MMAVYLTISLTVSAALNFYNHRLSLGR
HHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]