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The map label for this gene is radC [C]

Identifier: 83592071

GI number: 83592071

Start: 859390

End: 860121

Strand: Reverse

Name: radC [C]

Synonym: Rru_A0732

Alternate gene names: 83592071

Gene position: 860121-859390 (Counterclockwise)

Preceding gene: 83592072

Following gene: 83592069

Centisome position: 19.76

GC content: 67.76

Gene sequence:

>732_bases
ATGACCCCGGCCTCGGGGGAGACGCCGCCCAACAAGGCGGTTGTGGCGCCCGAAAAGGCGCCCCTCCCCCATTATTCCGG
GCACCGCGCCCGCCTGCGCGACCGCTTCCTGGCCAATCCCGATGGCCTGCCCGATTACGAATTGCTTGAATTACTGCTGT
TCCAGGCCAATCCGCGCGGCGATGTGAAGCCGCTGGCCAAGGCGCTGCTGGCGACCTTCGGATCCTTCGCCCGGGTGATT
TCGGCCTCGCCCGAGGCTTTGCGCCGGGTTGACGGCGTGGGCGACGCGGCGGTGGCGGCGCTCAAAACCGCCGAGGCCTC
GGCCCACCGCCTGCTCAAGGGCGAGGTGATGAACCAGCCGGTGCTCGGCGCCTGGGACCGGGTGCTCGATTACTGCCACG
CCACCATGGACCACCGGCCGATCGAGCAGTTCCGCGTGCTGTTTTTGGATAACCGCAACCGCCTGATCGCCGACGAGCTT
CAGCAGACCGGCACCATCAACCATACCCCAGTCTATCCACGCGAGGTGGCGCGCCGCGCCCTGGAACTGCACGCCGCGGC
GATTATAATGGTCCACAACCACCCATCAGGCGACCCCGCCCCCTCGGCCGCCGATCAGGACATGACCTTGCAGGTGCGCG
ACGCCCTGCGCGCCGTCGGCGTCGGCCTGCACGACCATATTGTGGTGGCGCGCGGCGGCCATGTGTCGTTCCGCTCGCAA
GGGCTGTTCTAA

Upstream 100 bases:

>100_bases
CGGCCCAGTTCGAGCATTCGATCGGCGTGACCGCCGATGGCTGCGAGATTTTCACCCTGTCGCCCAAAGGCTGGCACTGC
CCGCCCTATACCGAGGCGCC

Downstream 100 bases:

>100_bases
GATCTTGATAGTCAAATAAATCGTCGTCGCGATCTGGTTCAGAGCGCTCGGGATTTATTCTAGAACATCGCTCGGGTCGG
TCCGTCCCTAGATCCCGGCC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTPASGETPPNKAVVAPEKAPLPHYSGHRARLRDRFLANPDGLPDYELLELLLFQANPRGDVKPLAKALLATFGSFARVI
SASPEALRRVDGVGDAAVAALKTAEASAHRLLKGEVMNQPVLGAWDRVLDYCHATMDHRPIEQFRVLFLDNRNRLIADEL
QQTGTINHTPVYPREVARRALELHAAAIIMVHNHPSGDPAPSAADQDMTLQVRDALRAVGVGLHDHIVVARGGHVSFRSQ
GLF

Sequences:

>Translated_243_residues
MTPASGETPPNKAVVAPEKAPLPHYSGHRARLRDRFLANPDGLPDYELLELLLFQANPRGDVKPLAKALLATFGSFARVI
SASPEALRRVDGVGDAAVAALKTAEASAHRLLKGEVMNQPVLGAWDRVLDYCHATMDHRPIEQFRVLFLDNRNRLIADEL
QQTGTINHTPVYPREVARRALELHAAAIIMVHNHPSGDPAPSAADQDMTLQVRDALRAVGVGLHDHIVVARGGHVSFRSQ
GLF
>Mature_242_residues
TPASGETPPNKAVVAPEKAPLPHYSGHRARLRDRFLANPDGLPDYELLELLLFQANPRGDVKPLAKALLATFGSFARVIS
ASPEALRRVDGVGDAAVAALKTAEASAHRLLKGEVMNQPVLGAWDRVLDYCHATMDHRPIEQFRVLFLDNRNRLIADELQ
QTGTINHTPVYPREVARRALELHAAAIIMVHNHPSGDPAPSAADQDMTLQVRDALRAVGVGLHDHIVVARGGHVSFRSQG
LF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=199, Percent_Identity=34.6733668341709, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI2367100, Length=102, Percent_Identity=50, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788312, Length=102, Percent_Identity=49.0196078431373, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1788997, Length=114, Percent_Identity=42.1052631578947, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26490; Mature: 26358

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPASGETPPNKAVVAPEKAPLPHYSGHRARLRDRFLANPDGLPDYELLELLLFQANPRG
CCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC
DVKPLAKALLATFGSFARVISASPEALRRVDGVGDAAVAALKTAEASAHRLLKGEVMNQP
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
VLGAWDRVLDYCHATMDHRPIEQFRVLFLDNRNRLIADELQQTGTINHTPVYPREVARRA
CHHHHHHHHHHHHHHCCCCCHHHHEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH
LELHAAAIIMVHNHPSGDPAPSAADQDMTLQVRDALRAVGVGLHDHIVVARGGHVSFRSQ
HHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCEECCCC
GLF
CCC
>Mature Secondary Structure 
TPASGETPPNKAVVAPEKAPLPHYSGHRARLRDRFLANPDGLPDYELLELLLFQANPRG
CCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC
DVKPLAKALLATFGSFARVISASPEALRRVDGVGDAAVAALKTAEASAHRLLKGEVMNQP
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
VLGAWDRVLDYCHATMDHRPIEQFRVLFLDNRNRLIADELQQTGTINHTPVYPREVARRA
CHHHHHHHHHHHHHHCCCCCHHHHEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH
LELHAAAIIMVHNHPSGDPAPSAADQDMTLQVRDALRAVGVGLHDHIVVARGGHVSFRSQ
HHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCEECCCC
GLF
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA