Click here to switch to the map view.

The map label for this gene is sigK [H]

Identifier: 83592061

GI number: 83592061

Start: 850059

End: 850679

Strand: Reverse

Name: sigK [H]

Synonym: Rru_A0722

Alternate gene names: 83592061

Gene position: 850679-850059 (Counterclockwise)

Preceding gene: 83592067

Following gene: 83592060

Centisome position: 19.54

GC content: 64.73

Gene sequence:

>621_bases
ATGCCCAGTCCGACCGCGCCCGGTTCGACGGCGACCCCGGCCTCCCCGGCCCCTCCCCCCTCTCCCGCCGCCGACGGCGC
CGATCACGGCGCGCTGATCGTCGCCATCGCCCGCTCGGGCGATCGCGCCGCCTTCGCCACGCTTTTCACCCACTACGCCC
CGCGGTTGAAATCCTATCTGCGGCGCCTGGGTGCCAATGACGCCAGCGCCGAGGAAGTGGCCCAGGAGGCGTTGTTGATG
GTCTGGCGCAAGGCCGAGCGCTTCGATCCGACGAAAGCGGGAGCCGCGACCTGGATTTTCACCATCGCGCGTAATCTGCG
CATCGACATGTTGCGTAAGGAGAGACGACCCGAGATCGACCCCGAGGATCCCTTGCTCGAACCCTCAAGTCCCGATGCGG
CCGATATCCTCATCGAAAAGGACCAGCGCGAGACCCGGGTGCGAACGGCTTTGCGATCCCTGCCCGCCGATCAGGCCGAG
GTGGTCAGGCTGGCTTTTTTCGAAGATCTGACCCACGTCGAAGTTGCCGATCGTCTTGGCCTACCCCTTGGAACCGTGAA
ATCCCGTTTGCGTTTGGCCTTTTCCAAGGTGCGCGGATCTGTTGGAGACGAAGTGCGATGA

Upstream 100 bases:

>100_bases
CACGGGACGGATGAAAAGCCCGCTGTGCGCTCCCATCCTTTGGGTTTGGGGCGCCCTCCGCCTCTTGCTGACCCTTGGCA
CCGGAAAGGGACTTTCACTG

Downstream 100 bases:

>100_bases
CCCTGTCCCACCACCCGAGCGAAAGCCTGCTCGCCGCCTATGCGGCGGGAGTCCTGGGCGAGGGGGCGAGCCTGATCGTC
GCCGCCCATCTGACCCTCTG

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MPSPTAPGSTATPASPAPPPSPAADGADHGALIVAIARSGDRAAFATLFTHYAPRLKSYLRRLGANDASAEEVAQEALLM
VWRKAERFDPTKAGAATWIFTIARNLRIDMLRKERRPEIDPEDPLLEPSSPDAADILIEKDQRETRVRTALRSLPADQAE
VVRLAFFEDLTHVEVADRLGLPLGTVKSRLRLAFSKVRGSVGDEVR

Sequences:

>Translated_206_residues
MPSPTAPGSTATPASPAPPPSPAADGADHGALIVAIARSGDRAAFATLFTHYAPRLKSYLRRLGANDASAEEVAQEALLM
VWRKAERFDPTKAGAATWIFTIARNLRIDMLRKERRPEIDPEDPLLEPSSPDAADILIEKDQRETRVRTALRSLPADQAE
VVRLAFFEDLTHVEVADRLGLPLGTVKSRLRLAFSKVRGSVGDEVR
>Mature_205_residues
PSPTAPGSTATPASPAPPPSPAADGADHGALIVAIARSGDRAAFATLFTHYAPRLKSYLRRLGANDASAEEVAQEALLMV
WRKAERFDPTKAGAATWIFTIARNLRIDMLRKERRPEIDPEDPLLEPSSPDAADILIEKDQRETRVRTALRSLPADQAEV
VRLAFFEDLTHVEVADRLGLPLGTVKSRLRLAFSKVRGSVGDEVR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 22442; Mature: 22311

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPTAPGSTATPASPAPPPSPAADGADHGALIVAIARSGDRAAFATLFTHYAPRLKSYL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
RRLGANDASAEEVAQEALLMVWRKAERFDPTKAGAATWIFTIARNLRIDMLRKERRPEID
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PEDPLLEPSSPDAADILIEKDQRETRVRTALRSLPADQAEVVRLAFFEDLTHVEVADRLG
CCCCCCCCCCCCHHHHEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
LPLGTVKSRLRLAFSKVRGSVGDEVR
CCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PSPTAPGSTATPASPAPPPSPAADGADHGALIVAIARSGDRAAFATLFTHYAPRLKSYL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
RRLGANDASAEEVAQEALLMVWRKAERFDPTKAGAATWIFTIARNLRIDMLRKERRPEID
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PEDPLLEPSSPDAADILIEKDQRETRVRTALRSLPADQAEVVRLAFFEDLTHVEVADRLG
CCCCCCCCCCCCHHHHEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
LPLGTVKSRLRLAFSKVRGSVGDEVR
CCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]