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The map label for this gene is rarD [C]

Identifier: 83592045

GI number: 83592045

Start: 834145

End: 835077

Strand: Reverse

Name: rarD [C]

Synonym: Rru_A0706

Alternate gene names: 83592045

Gene position: 835077-834145 (Counterclockwise)

Preceding gene: 83592046

Following gene: 83592044

Centisome position: 19.18

GC content: 66.35

Gene sequence:

>933_bases
ATGAACGCGCCCATGGCCTCCCCCTCCCTGTCGCCTTCGCCCGCCGGGTCTTCGGCGCGGGGGGTGGCGGCCGCCCTTGG
CGCCTATGGCGTCTGGGGCATCTCGCCGCTGTTTTTCAAAGCCGTCTCGGAAGTTTCGGCCCTGGAGATCCTCAGCCACC
GCGTTCTCTGGGCGATGGTGGTGATGGGTATTACCCTGGGGCTGCGCGGCGAGTTGGCCGCCAGCTTGCGTTTCCTGGCC
AATCGTCGCGTCTTCTTGCTGATGCTGGCGGCGACGGTGGCGATTTCCATCAACTGGCTGACCTTCATCCATGCCGCGAC
CTCCGGCCATGCCATGCAGGGCTCGCTCGGCTATTACATCTTTCCCTTGGTCACCGTGGTTCTGGGACGGCTGGTGCTCG
GCGAGGAGATGAGCCGCCGCCAGGGGCTGGCCGTCGCCCTCGCCGCCGCCGGCGTCGGCATCGCCCTGTGGCGCACCGGA
TCGCTGCCGTGGATTTCGCTGACCCTGGCCTCAACCTTTGCCCTCTATGGCCTGATCCGCAAAACCGTATCGGTGCCGCC
GCTGGCCGGGCTTTTCATCGAAGCCCTGCTGCTGTCGCCGGTGTTGATCGGCCTCCTCGCCTGGATCGAGCTCAAGGGCG
GCGGTCTGGCCTTTTTCGATGGTCCTTGGGGGCGCAGCCTGTGGCTGATGGCGCTTGGCCCGCTGACCGCCGTACCGCTG
TTCTTCTTCACCTGGGCGGCGCGCCGGCTGCGCCTGTCGACGCTGGGCGTCATCCAGTACACCAATCCGACCATCCAGTT
CGCTTTGGCCGCCCTGGTCTTCAAGGAACCGGTGACGACGACCGAGCTTCTGACCTTCGGCTTCATCTGGGCCGGCGTCG
CCCTTTACCTCTGGCCGGTCCGCAAAGACCCGCCGGCGCAGGAATACCCCTAA

Upstream 100 bases:

>100_bases
AAAATGGGCGGCGACTTGCACGCCCTCGCCCTGCAGACCAAGCCCAAGGACTGATCCCGGGACATCCCGGCCCGGGGTCT
TATGGCCCACAGCCTGACGG

Downstream 100 bases:

>100_bases
AAGGATTGGAATTGACAGCCGCCCTCCGGCCATCCCATATCGCGCCCAGGTTCCCCCCTCCGATCCCCTTTGAAAGGACT
GCCCGATGAGCGTTCAGGAC

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MNAPMASPSLSPSPAGSSARGVAAALGAYGVWGISPLFFKAVSEVSALEILSHRVLWAMVVMGITLGLRGELAASLRFLA
NRRVFLLMLAATVAISINWLTFIHAATSGHAMQGSLGYYIFPLVTVVLGRLVLGEEMSRRQGLAVALAAAGVGIALWRTG
SLPWISLTLASTFALYGLIRKTVSVPPLAGLFIEALLLSPVLIGLLAWIELKGGGLAFFDGPWGRSLWLMALGPLTAVPL
FFFTWAARRLRLSTLGVIQYTNPTIQFALAALVFKEPVTTTELLTFGFIWAGVALYLWPVRKDPPAQEYP

Sequences:

>Translated_310_residues
MNAPMASPSLSPSPAGSSARGVAAALGAYGVWGISPLFFKAVSEVSALEILSHRVLWAMVVMGITLGLRGELAASLRFLA
NRRVFLLMLAATVAISINWLTFIHAATSGHAMQGSLGYYIFPLVTVVLGRLVLGEEMSRRQGLAVALAAAGVGIALWRTG
SLPWISLTLASTFALYGLIRKTVSVPPLAGLFIEALLLSPVLIGLLAWIELKGGGLAFFDGPWGRSLWLMALGPLTAVPL
FFFTWAARRLRLSTLGVIQYTNPTIQFALAALVFKEPVTTTELLTFGFIWAGVALYLWPVRKDPPAQEYP
>Mature_310_residues
MNAPMASPSLSPSPAGSSARGVAAALGAYGVWGISPLFFKAVSEVSALEILSHRVLWAMVVMGITLGLRGELAASLRFLA
NRRVFLLMLAATVAISINWLTFIHAATSGHAMQGSLGYYIFPLVTVVLGRLVLGEEMSRRQGLAVALAAAGVGIALWRTG
SLPWISLTLASTFALYGLIRKTVSVPPLAGLFIEALLLSPVLIGLLAWIELKGGGLAFFDGPWGRSLWLMALGPLTAVPL
FFFTWAARRLRLSTLGVIQYTNPTIQFALAALVFKEPVTTTELLTFGFIWAGVALYLWPVRKDPPAQEYP

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=286, Percent_Identity=41.958041958042, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33225; Mature: 33225

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPMASPSLSPSPAGSSARGVAAALGAYGVWGISPLFFKAVSEVSALEILSHRVLWAMV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VMGITLGLRGELAASLRFLANRRVFLLMLAATVAISINWLTFIHAATSGHAMQGSLGYYI
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
FPLVTVVLGRLVLGEEMSRRQGLAVALAAAGVGIALWRTGSLPWISLTLASTFALYGLIR
HHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCEEEEEECCCCCEEHHHHHHHHHHHHHHH
KTVSVPPLAGLFIEALLLSPVLIGLLAWIELKGGGLAFFDGPWGRSLWLMALGPLTAVPL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCHHHHHHHHHHHHHHH
FFFTWAARRLRLSTLGVIQYTNPTIQFALAALVFKEPVTTTELLTFGFIWAGVALYLWPV
HHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEC
RKDPPAQEYP
CCCCCCCCCC
>Mature Secondary Structure
MNAPMASPSLSPSPAGSSARGVAAALGAYGVWGISPLFFKAVSEVSALEILSHRVLWAMV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VMGITLGLRGELAASLRFLANRRVFLLMLAATVAISINWLTFIHAATSGHAMQGSLGYYI
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
FPLVTVVLGRLVLGEEMSRRQGLAVALAAAGVGIALWRTGSLPWISLTLASTFALYGLIR
HHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCEEEEEECCCCCEEHHHHHHHHHHHHHHH
KTVSVPPLAGLFIEALLLSPVLIGLLAWIELKGGGLAFFDGPWGRSLWLMALGPLTAVPL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCHHHHHHHHHHHHHHH
FFFTWAARRLRLSTLGVIQYTNPTIQFALAALVFKEPVTTTELLTFGFIWAGVALYLWPV
HHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEC
RKDPPAQEYP
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]