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The map label for this gene is infA

Identifier: 83592001

GI number: 83592001

Start: 786071

End: 786358

Strand: Reverse

Name: infA

Synonym: Rru_A0662

Alternate gene names: 83592001

Gene position: 786358-786071 (Counterclockwise)

Preceding gene: 83592002

Following gene: 83592000

Centisome position: 18.07

GC content: 61.81

Gene sequence:

>288_bases
ATGGCGAAAGAAGAGCTTATCGAGATGGACGGCGTCGTCACCGACGTTCTCCCGGACTCTCGATTCAAGGTGCAGTTGGA
TAACGGCCACGAAGTGATGGCCTATTCCGCGGGCAAGATGAAGAAGCACCGCATTCGGATCATGGTCGGCGACCGCGTCG
ACATGGAAATGACTCCTTACGATCTGACCAAGGCGCGTATCACCTATCGTCATAAGGTCGGCGGCCCTCCTGGCCCGGTC
ACCGGTGGCGGCAACCGCCCCCCTCCCCGCCAGCCCCGCCGCCGCTGA

Upstream 100 bases:

>100_bases
GGCGGCGGATTTTTCGGGTAAGTATCGAGAGATCAGGACGAGGGGAGAAGGTGCGGCGGTCCATGCGGACGGGCCCTTCC
CCGACAACAAGGAAGTGGGA

Downstream 100 bases:

>100_bases
TCCCGGAGGTCGCTATGTCGGGCTCATTGTTTCCGACTTATACCCGTGCCGAGCGGATCGCCGATGCGGCGATCCACATG
CTGGGCGTTCCCCTCGGTCT

Product: translation initiation factor 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MAKEELIEMDGVVTDVLPDSRFKVQLDNGHEVMAYSAGKMKKHRIRIMVGDRVDMEMTPYDLTKARITYRHKVGGPPGPV
TGGGNRPPPRQPRRR

Sequences:

>Translated_95_residues
MAKEELIEMDGVVTDVLPDSRFKVQLDNGHEVMAYSAGKMKKHRIRIMVGDRVDMEMTPYDLTKARITYRHKVGGPPGPV
TGGGNRPPPRQPRRR
>Mature_94_residues
AKEELIEMDGVVTDVLPDSRFKVQLDNGHEVMAYSAGKMKKHRIRIMVGDRVDMEMTPYDLTKARITYRHKVGGPPGPVT
GGGNRPPPRQPRRR

Specific function: No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3

COG id: COG0361

COG function: function code J; Translation initiation factor 1 (IF-1)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1-like domain

Homologues:

Organism=Escherichia coli, GI1787110, Length=72, Percent_Identity=54.1666666666667, Blast_Score=89, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IF1_RHORT (Q2RWM9)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_425753.1
- ProteinModelPortal:   Q2RWM9
- SMR:   Q2RWM9
- STRING:   Q2RWM9
- GeneID:   3834300
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A0662
- NMPDR:   fig|1085.1.peg.1678
- eggNOG:   COG0361
- HOGENOM:   HBG286099
- OMA:   VQLDAGH
- BioCyc:   RRUB269796:RRU_A0662-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00075
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR022967
- InterPro:   IPR006196
- InterPro:   IPR004368
- Gene3D:   G3DSA:2.40.50.140
- SMART:   SM00316
- TIGRFAMs:   TIGR00008

Pfam domain/function: PF01176 eIF-1a; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 10742; Mature: 10610

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: PS50832 S1_IF1_TYPE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.4 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEELIEMDGVVTDVLPDSRFKVQLDNGHEVMAYSAGKMKKHRIRIMVGDRVDMEMTPY
CCHHHHHHCCCEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEEEECCCCCCEECCC
DLTKARITYRHKVGGPPGPVTGGGNRPPPRQPRRR
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKEELIEMDGVVTDVLPDSRFKVQLDNGHEVMAYSAGKMKKHRIRIMVGDRVDMEMTPY
CHHHHHHCCCEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEEEECCCCCCEECCC
DLTKARITYRHKVGGPPGPVTGGGNRPPPRQPRRR
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA