Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 83591900

GI number: 83591900

Start: 663607

End: 664608

Strand: Direct

Name: cydB [H]

Synonym: Rru_A0561

Alternate gene names: 83591900

Gene position: 663607-664608 (Clockwise)

Preceding gene: 83591899

Following gene: 83591903

Centisome position: 15.25

GC content: 64.97

Gene sequence:

>1002_bases
ATGTCGATTGACCTGCCTTTGATCTGGGGGATGCTGATCGCTTTTGCCGTCTTCGCCTATGTGGTGCTCGATGGCTTCGA
CCTGGGCATCGGCATCCTGTTTCCCTTTCTGGGAGGCGAGGACGAGCGTAATCGGGCGATGAATTCGATCGCCCCGGTGT
GGGACGGCAATGAAACTTGGCTGGTTCTTGGCGGCGGCGGCCTGTTCGCCGCCTTTCCCGAAGCTTATTCGGTGCTGATG
ACCGCCTTTTACGCCCCGGTCATCGCCATGCTGCTGGCTCTGGTGTTTCGCGGCGTCGCCTTTGAATTCCGCTTCATGGC
CAAACGCGGCAAGCGCTTTTGGACGGCCGGCTTCTTCGCCGGATCGCTGATGGCCGCCTTGTGCCAGGGGATGATGCTGG
GGGCCTTCGTTCAGGGCATCGCCTTTGAGGACGGGCGCTATGCCGGGGGCTGGTTCGACTGGTTCAGCCCCTTCTCGCTG
CTGACGGGCGCGGCGGTGGTCTGCGGCTATAGCTTGCTGGGCGCCGGCTGGCTGGCGATCAAGACCGATGGGCCCTTGGC
CGATTTCGCCTTTCGCATCGCCCGGCTTGCCGGAGTCGTTACCCTAGTGGCCATCGTCGCCGTTTCGGCGCTGACGCCGC
TGGTCGCGCCGCTTGCCGCCGAACGCTGGTTCGGTCCGCAGATGCTGTGGCACGCCCCGGCACCGATCGCCGTGGTGGTG
CTGGGCGCCGTGTTGCTGCGCGCCATCGCCCGCCGGCGCGAGCTGACGCTGTTCCTCTCGGGATTGGGGCTGTTCGCCAC
CTGCTACATCGGCTTCGCCCTGTCGAAGTATCCCTATATCATCCCCGATCACGTCACCTTCCGCGCCGCCGCCGCCGATG
AGGCCGCCCTGGCCTTCCTGCTGCCCGGGGCCCTGGTGCTGATCCCGATCATTCTGGGCTACACCGCCTATGCCTATTGG
GTGTTCCGCGGCAAGACCGGACACGAGGGGTACGGCCATTGA

Upstream 100 bases:

>100_bases
CTCAAGATGATGGCCCAGCCGGTGGCCCGCTCCAAGGATGATCCCGTCCCCTTCACCCGCGCCGCCGGCATCACCCCGGG
TCCGGCCGAGGAGGCTCGCC

Downstream 100 bases:

>100_bases
GCGGGAACTCCTTGCCCCCCGAAGGCGGGCGCGGGCGGCGGCTTTTGTGGTTCGTCGCCCTTTACGGCGGATCGCTGGCC
GCCTTGGGGCTGGTTGCCGC

Product: cytochrome bd ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSIDLPLIWGMLIAFAVFAYVVLDGFDLGIGILFPFLGGEDERNRAMNSIAPVWDGNETWLVLGGGGLFAAFPEAYSVLM
TAFYAPVIAMLLALVFRGVAFEFRFMAKRGKRFWTAGFFAGSLMAALCQGMMLGAFVQGIAFEDGRYAGGWFDWFSPFSL
LTGAAVVCGYSLLGAGWLAIKTDGPLADFAFRIARLAGVVTLVAIVAVSALTPLVAPLAAERWFGPQMLWHAPAPIAVVV
LGAVLLRAIARRRELTLFLSGLGLFATCYIGFALSKYPYIIPDHVTFRAAAADEAALAFLLPGALVLIPIILGYTAYAYW
VFRGKTGHEGYGH

Sequences:

>Translated_333_residues
MSIDLPLIWGMLIAFAVFAYVVLDGFDLGIGILFPFLGGEDERNRAMNSIAPVWDGNETWLVLGGGGLFAAFPEAYSVLM
TAFYAPVIAMLLALVFRGVAFEFRFMAKRGKRFWTAGFFAGSLMAALCQGMMLGAFVQGIAFEDGRYAGGWFDWFSPFSL
LTGAAVVCGYSLLGAGWLAIKTDGPLADFAFRIARLAGVVTLVAIVAVSALTPLVAPLAAERWFGPQMLWHAPAPIAVVV
LGAVLLRAIARRRELTLFLSGLGLFATCYIGFALSKYPYIIPDHVTFRAAAADEAALAFLLPGALVLIPIILGYTAYAYW
VFRGKTGHEGYGH
>Mature_332_residues
SIDLPLIWGMLIAFAVFAYVVLDGFDLGIGILFPFLGGEDERNRAMNSIAPVWDGNETWLVLGGGGLFAAFPEAYSVLMT
AFYAPVIAMLLALVFRGVAFEFRFMAKRGKRFWTAGFFAGSLMAALCQGMMLGAFVQGIAFEDGRYAGGWFDWFSPFSLL
TGAAVVCGYSLLGAGWLAIKTDGPLADFAFRIARLAGVVTLVAIVAVSALTPLVAPLAAERWFGPQMLWHAPAPIAVVVL
GAVLLRAIARRRELTLFLSGLGLFATCYIGFALSKYPYIIPDHVTFRAAAADEAALAFLLPGALVLIPIILGYTAYAYWV
FRGKTGHEGYGH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=365, Percent_Identity=31.5068493150685, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI1787213, Length=370, Percent_Identity=28.1081081081081, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 35881; Mature: 35750

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDLPLIWGMLIAFAVFAYVVLDGFDLGIGILFPFLGGEDERNRAMNSIAPVWDGNETW
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEE
LVLGGGGLFAAFPEAYSVLMTAFYAPVIAMLLALVFRGVAFEFRFMAKRGKRFWTAGFFA
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GSLMAALCQGMMLGAFVQGIAFEDGRYAGGWFDWFSPFSLLTGAAVVCGYSLLGAGWLAI
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
KTDGPLADFAFRIARLAGVVTLVAIVAVSALTPLVAPLAAERWFGPQMLWHAPAPIAVVV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHH
LGAVLLRAIARRRELTLFLSGLGLFATCYIGFALSKYPYIIPDHVTFRAAAADEAALAFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCHHHHHHH
LPGALVLIPIILGYTAYAYWVFRGKTGHEGYGH
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCC
>Mature Secondary Structure 
SIDLPLIWGMLIAFAVFAYVVLDGFDLGIGILFPFLGGEDERNRAMNSIAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEE
LVLGGGGLFAAFPEAYSVLMTAFYAPVIAMLLALVFRGVAFEFRFMAKRGKRFWTAGFFA
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GSLMAALCQGMMLGAFVQGIAFEDGRYAGGWFDWFSPFSLLTGAAVVCGYSLLGAGWLAI
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
KTDGPLADFAFRIARLAGVVTLVAIVAVSALTPLVAPLAAERWFGPQMLWHAPAPIAVVV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHH
LGAVLLRAIARRRELTLFLSGLGLFATCYIGFALSKYPYIIPDHVTFRAAAADEAALAFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCHHHHHHH
LPGALVLIPIILGYTAYAYWVFRGKTGHEGYGH
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]