Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 83591843

GI number: 83591843

Start: 593863

End: 595122

Strand: Direct

Name: yebA [C]

Synonym: Rru_A0504

Alternate gene names: 83591843

Gene position: 593863-595122 (Clockwise)

Preceding gene: 83591842

Following gene: 83591844

Centisome position: 13.64

GC content: 69.52

Gene sequence:

>1260_bases
ATGACCTCTTCGCCTCTGCTGGGCCTCGCCCTTGCCGCCGCCCTTGTTGTCCCGACGCTGGCTTCGGCCGCGGCCAAGGT
GCCGCCGCTTCCGCCATCGACTCCCACGGCCAAGGGTGTCGGCGTCGAACCGGCGCCGCTCAAAAAGGGGCCGGTGGTCA
AGACTCTGGCGGTCAAGGATGTGGCGACCCAGAAGGATTTCGTGGTCCGCCCCGGCGATAACTTTTGGGATCTGGTCACC
CGGGCCGGGGTCGACAACAACGACCGCGCCGCCCTGGTCGATAGCTTCAATGCCCAAAAAGACCGCCCGCGCCTTGATCG
CGACGATACCGTCAGCCTGACATGGTCAAAGGAGGCCAAGCCCCGGCTGCTGATGGCCAAGGTGATCTGCGCCGGCCAGA
AACCGCTGACCCTGGTTCTGGATAAGACCGGCCGCTTCAAGGCCAGTCGCGCCGCCTCGTCGCCGGCCTTGGCGATGCCG
ACGCCCCAACCCGCCGCCCAGCCCGCCGCCCTAGCCGCCGCCCCGGTGGTGCCGCCCGCCGCCGGCAAGCCGGCCAGGAT
GATGGCGGCGACCGCCGCCCCGCCACCGCCGCCGCCCCGTCCGTCCCCGGTGGCCGCCGCCCCTTCGCTGGCCGACGCCA
CCCGTACCGCCGCCGTGATCGCCCCCCGTCCGGCGCCGCCCAAGGATACCCTCCATCGCTTCGTGTCGGCCAATTCGTCC
TTCGGCCGCCTGAAGCTGACCCAGGTGGTGGCCCGGGGTGGCCTGCCGGCGCCGGCGCATAAGCCCGCCCCCGCCCTCGC
CCCGGAACGCGCCACTCCGTCCTATACCGGCAATACCATGGCTTTGGCCGCGCCTTTGCCCGGGGCGCGCATCACCTCGA
CCTGGGGCTGGCGGATCCATCCGGTGCTCAACCGTCCGCAATTCCACAAAGGCGTCGATTTCGGCGCCCCCACCGGCACG
CCGGTGCTGGCCGCGGCCGATGGCTGGGTGCTCTCCACCGGCTATCAGGGCAACTACGGCAAGCTGGTGACCGTTCAACA
TAACGCCCATGTCACCACCGCCTATGCCCATCTCGATGGCTATGCCAAGGATGCACGACCGGGCAGCCGGGTGAGAAAAG
GCCAGATCATCGGCTATGTCGGGGAAACCGGTCTGGCGACCGGGCCGCACCTTTATTACGAGGTGTTCGTGGACGGCCGG
CAGGTCGATCCGCGCCAGCCCACCATCGCCTTGCCCTTCCGCACCGCCCGCTCGGATTAG

Upstream 100 bases:

>100_bases
CCGGTCGACAGGGGCCAAGCGGAAGGGTATGGTTGGCGGGTCAGTCCTGCCGTAGCGCCTTCCGCGTGTTTTCCCCCAGA
ATCCAACCACCGGGCCGCTC

Downstream 100 bases:

>100_bases
GCCGCCAGCCTTTCCCTTTCGGAAAATTCATCAAAAATAGCCAACTCTTCGGATCGCCGCACCGCCAAACGCGTTGGTGG
CGCGCAAACAATCCGAGGGG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTSSPLLGLALAAALVVPTLASAAAKVPPLPPSTPTAKGVGVEPAPLKKGPVVKTLAVKDVATQKDFVVRPGDNFWDLVT
RAGVDNNDRAALVDSFNAQKDRPRLDRDDTVSLTWSKEAKPRLLMAKVICAGQKPLTLVLDKTGRFKASRAASSPALAMP
TPQPAAQPAALAAAPVVPPAAGKPARMMAATAAPPPPPPRPSPVAAAPSLADATRTAAVIAPRPAPPKDTLHRFVSANSS
FGRLKLTQVVARGGLPAPAHKPAPALAPERATPSYTGNTMALAAPLPGARITSTWGWRIHPVLNRPQFHKGVDFGAPTGT
PVLAAADGWVLSTGYQGNYGKLVTVQHNAHVTTAYAHLDGYAKDARPGSRVRKGQIIGYVGETGLATGPHLYYEVFVDGR
QVDPRQPTIALPFRTARSD

Sequences:

>Translated_419_residues
MTSSPLLGLALAAALVVPTLASAAAKVPPLPPSTPTAKGVGVEPAPLKKGPVVKTLAVKDVATQKDFVVRPGDNFWDLVT
RAGVDNNDRAALVDSFNAQKDRPRLDRDDTVSLTWSKEAKPRLLMAKVICAGQKPLTLVLDKTGRFKASRAASSPALAMP
TPQPAAQPAALAAAPVVPPAAGKPARMMAATAAPPPPPPRPSPVAAAPSLADATRTAAVIAPRPAPPKDTLHRFVSANSS
FGRLKLTQVVARGGLPAPAHKPAPALAPERATPSYTGNTMALAAPLPGARITSTWGWRIHPVLNRPQFHKGVDFGAPTGT
PVLAAADGWVLSTGYQGNYGKLVTVQHNAHVTTAYAHLDGYAKDARPGSRVRKGQIIGYVGETGLATGPHLYYEVFVDGR
QVDPRQPTIALPFRTARSD
>Mature_418_residues
TSSPLLGLALAAALVVPTLASAAAKVPPLPPSTPTAKGVGVEPAPLKKGPVVKTLAVKDVATQKDFVVRPGDNFWDLVTR
AGVDNNDRAALVDSFNAQKDRPRLDRDDTVSLTWSKEAKPRLLMAKVICAGQKPLTLVLDKTGRFKASRAASSPALAMPT
PQPAAQPAALAAAPVVPPAAGKPARMMAATAAPPPPPPRPSPVAAAPSLADATRTAAVIAPRPAPPKDTLHRFVSANSSF
GRLKLTQVVARGGLPAPAHKPAPALAPERATPSYTGNTMALAAPLPGARITSTWGWRIHPVLNRPQFHKGVDFGAPTGTP
VLAAADGWVLSTGYQGNYGKLVTVQHNAHVTTAYAHLDGYAKDARPGSRVRKGQIIGYVGETGLATGPHLYYEVFVDGRQ
VDPRQPTIALPFRTARSD

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=116, Percent_Identity=41.3793103448276, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 43695; Mature: 43563

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSPLLGLALAAALVVPTLASAAAKVPPLPPSTPTAKGVGVEPAPLKKGPVVKTLAVKD
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHH
VATQKDFVVRPGDNFWDLVTRAGVDNNDRAALVDSFNAQKDRPRLDRDDTVSLTWSKEAK
HCCCCCEEECCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCC
PRLLMAKVICAGQKPLTLVLDKTGRFKASRAASSPALAMPTPQPAAQPAALAAAPVVPPA
CHHEEHHHHHCCCCCEEEEEECCCCEEHHHCCCCCEEECCCCCCCCCCCHHEECCCCCCC
AGKPARMMAATAAPPPPPPRPSPVAAAPSLADATRTAAVIAPRPAPPKDTLHRFVSANSS
CCCCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHCEEEEEECCCCCCHHHHHHHHHCCCC
FGRLKLTQVVARGGLPAPAHKPAPALAPERATPSYTGNTMALAAPLPGARITSTWGWRIH
CCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCEEEE
PVLNRPQFHKGVDFGAPTGTPVLAAADGWVLSTGYQGNYGKLVTVQHNAHVTTAYAHLDG
ECCCCCCHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEEEEECCCEEEEEEEECCC
YAKDARPGSRVRKGQIIGYVGETGLATGPHLYYEVFVDGRQVDPRQPTIALPFRTARSD
CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECHHCCCC
>Mature Secondary Structure 
TSSPLLGLALAAALVVPTLASAAAKVPPLPPSTPTAKGVGVEPAPLKKGPVVKTLAVKD
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHH
VATQKDFVVRPGDNFWDLVTRAGVDNNDRAALVDSFNAQKDRPRLDRDDTVSLTWSKEAK
HCCCCCEEECCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCC
PRLLMAKVICAGQKPLTLVLDKTGRFKASRAASSPALAMPTPQPAAQPAALAAAPVVPPA
CHHEEHHHHHCCCCCEEEEEECCCCEEHHHCCCCCEEECCCCCCCCCCCHHEECCCCCCC
AGKPARMMAATAAPPPPPPRPSPVAAAPSLADATRTAAVIAPRPAPPKDTLHRFVSANSS
CCCCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHCEEEEEECCCCCCHHHHHHHHHCCCC
FGRLKLTQVVARGGLPAPAHKPAPALAPERATPSYTGNTMALAAPLPGARITSTWGWRIH
CCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCEEEE
PVLNRPQFHKGVDFGAPTGTPVLAAADGWVLSTGYQGNYGKLVTVQHNAHVTTAYAHLDG
ECCCCCCHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEEEEECCCEEEEEEEECCC
YAKDARPGSRVRKGQIIGYVGETGLATGPHLYYEVFVDGRQVDPRQPTIALPFRTARSD
CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]