Click here to switch to the map view.

The map label for this gene is lysK [H]

Identifier: 83591842

GI number: 83591842

Start: 591916

End: 593568

Strand: Direct

Name: lysK [H]

Synonym: Rru_A0503

Alternate gene names: 83591842

Gene position: 591916-593568 (Clockwise)

Preceding gene: 83591836

Following gene: 83591843

Centisome position: 13.6

GC content: 62.67

Gene sequence:

>1653_bases
TTGCGGACCGCCTTCATGCCGATGATGTCTCTTGTTCCGCCCGCCCAGGACCGCGCCCTGGCGCTGTCCTCCTCCGCCTG
GCCGTTCCAGGAGGCGCGCGCGTTGCTGGAAAAACGGTTGAAGGGGACCTTGCCGGAAAAGGGCTATGTTCTGTTCGAAA
CCGGCTATGGCCCCTCGGGGCTGCCCCATATCGGCACCTTTGGCGAGGTTGTGCGCACCACCATGGTTCGCAACGCCTTT
CGGGTGATCGCCCCCGAGATGCCGGCCCGGCTGTTCACTTTTTCCGACGATATGGACGGTCTGCGCAAGGTTCCCGACAA
CATCCCCAATAAGGAGGTCGTGCGCCCCCATCTCGGCAAGCCGCTGACCCGCATTCCCGATCCCTTCGGCACCCATCCCA
GCTTCGGCCAGCACAACAACGCCCGGCTGCGCGCCTTCCTTGATTCTTTCGGCTTCGAGTATGAATTCCAATCGGCCACC
GACTGGTATACCTCGGGCCGTTTCGATGGCGCCCTGCTGCGCGTGCTGGAATGCCACGACGCCATCCGCGACGTGGTGCT
GCCGACGCTGGGCGAGGAACGCCGCGCCACCTATTCGCCCTTCCTGCCGATCTGCCCCGAGACCGGGGTGGTTCTTCAGG
TTCCGGTGGTGTCGACCGACGTGAAGGCCGGAACGCTGGTTTACCGGCGCGAGGACGGCAAGGAGATCGAGACCAAGGTC
ACCGGCGGCGCCTGCAAGCTGCAATGGAAGGCCGATTGGGGCACGCGCTGGTATGCCCTGGGCGTCGATTACGAAATGTC
GGGCAAGGATCTGATCGACAGCGTCAAGCTGTCGAGCCGCATCTGCCGTATTCTGGGTGGCGAGCCGCCGCAAAGCCTGA
CCTATGAATTGTTCCTGGATGGTCAGGGGCAGAAGATTTCCAAGTCCAAGGGCAACGGCCTGTCGGTCGAGGATTGGCTG
CGCTACGCCAATCCCGAAAGTCTGGCCCTGTTCATGTACCAGAAGCCCCAGACCGCCAAGCGCCTGCACTTCGACGTGAT
CCCGCGCGCCGTCGACGAGTATCTGACCTTCGTCGAGAAATTCCCCGGGCAGGACGAGAAGACCCAGTTGTCCAGCCCGG
CTTGGCATATCCACGGCGGCCGGCCGCCGGTGGAAAAGGCCCATCTGTCCTATTCGATCCTGCTCAATCTGGTCAGTGTC
TGCAATTCGGACAATCCGGCGGTGCTCTGGCATTACATCAGCCGCTATGCGCCTGGCGCCACGCCCGAAAGCGCTCCGAT
GCTGGCGGTGCTGGTCGAACGCGCCATCACCTATTACCGGGATTTCGTGCTGCCCCAGAAGGCCTATCGCAAGGCGACGG
CCGAAGAGATCACCGCGCTTGTCGATCTGCGGGCCGTACTCACCGCCCTGCCCAGGCCGGTCGAGGCCGAGGCGGCGCAG
ACCGCCGTTTACGAGGTGGGCAAGCGCCACGAGGGGCTGGGCGATCTCAAGGCCTGGTTCCAGGTTCTCTATCAGGTGCT
GCTTGGTCAGGACCAGGGACCGCGCATGGGAAGTTTCATCGCACTTTTTGGCATCGAAGAAATGCTGGACCTCCTTGACA
AGGCCATTTCGGGTTCCGATGTCATGGGGGAGCCAAAACTGAGCGTTTCGTAG

Upstream 100 bases:

>100_bases
TGCCTGGACGGCGTGGGTGATGTCGATTCGCCGCGATCGCGCGCCGGTCCTTGACGCTTGGCCGGCCGAGCCCTAGCCTC
TACAGCCCCTTTTCTCGAAC

Downstream 100 bases:

>100_bases
CTGCTATCCTCCTCCTAAGTATCAGTGCAAAAAGGCCGGACGCCGAAATCCGGCCTTTTTCGCGTTTTCAGCCCGGTATC
GGCGAGGCGAGGGCGGCTTT

Product: lysyl-tRNA synthetase

Products: NA

Alternate protein names: Lysine--tRNA ligase; LysRS [H]

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MRTAFMPMMSLVPPAQDRALALSSSAWPFQEARALLEKRLKGTLPEKGYVLFETGYGPSGLPHIGTFGEVVRTTMVRNAF
RVIAPEMPARLFTFSDDMDGLRKVPDNIPNKEVVRPHLGKPLTRIPDPFGTHPSFGQHNNARLRAFLDSFGFEYEFQSAT
DWYTSGRFDGALLRVLECHDAIRDVVLPTLGEERRATYSPFLPICPETGVVLQVPVVSTDVKAGTLVYRREDGKEIETKV
TGGACKLQWKADWGTRWYALGVDYEMSGKDLIDSVKLSSRICRILGGEPPQSLTYELFLDGQGQKISKSKGNGLSVEDWL
RYANPESLALFMYQKPQTAKRLHFDVIPRAVDEYLTFVEKFPGQDEKTQLSSPAWHIHGGRPPVEKAHLSYSILLNLVSV
CNSDNPAVLWHYISRYAPGATPESAPMLAVLVERAITYYRDFVLPQKAYRKATAEEITALVDLRAVLTALPRPVEAEAAQ
TAVYEVGKRHEGLGDLKAWFQVLYQVLLGQDQGPRMGSFIALFGIEEMLDLLDKAISGSDVMGEPKLSVS

Sequences:

>Translated_550_residues
MRTAFMPMMSLVPPAQDRALALSSSAWPFQEARALLEKRLKGTLPEKGYVLFETGYGPSGLPHIGTFGEVVRTTMVRNAF
RVIAPEMPARLFTFSDDMDGLRKVPDNIPNKEVVRPHLGKPLTRIPDPFGTHPSFGQHNNARLRAFLDSFGFEYEFQSAT
DWYTSGRFDGALLRVLECHDAIRDVVLPTLGEERRATYSPFLPICPETGVVLQVPVVSTDVKAGTLVYRREDGKEIETKV
TGGACKLQWKADWGTRWYALGVDYEMSGKDLIDSVKLSSRICRILGGEPPQSLTYELFLDGQGQKISKSKGNGLSVEDWL
RYANPESLALFMYQKPQTAKRLHFDVIPRAVDEYLTFVEKFPGQDEKTQLSSPAWHIHGGRPPVEKAHLSYSILLNLVSV
CNSDNPAVLWHYISRYAPGATPESAPMLAVLVERAITYYRDFVLPQKAYRKATAEEITALVDLRAVLTALPRPVEAEAAQ
TAVYEVGKRHEGLGDLKAWFQVLYQVLLGQDQGPRMGSFIALFGIEEMLDLLDKAISGSDVMGEPKLSVS
>Mature_550_residues
MRTAFMPMMSLVPPAQDRALALSSSAWPFQEARALLEKRLKGTLPEKGYVLFETGYGPSGLPHIGTFGEVVRTTMVRNAF
RVIAPEMPARLFTFSDDMDGLRKVPDNIPNKEVVRPHLGKPLTRIPDPFGTHPSFGQHNNARLRAFLDSFGFEYEFQSAT
DWYTSGRFDGALLRVLECHDAIRDVVLPTLGEERRATYSPFLPICPETGVVLQVPVVSTDVKAGTLVYRREDGKEIETKV
TGGACKLQWKADWGTRWYALGVDYEMSGKDLIDSVKLSSRICRILGGEPPQSLTYELFLDGQGQKISKSKGNGLSVEDWL
RYANPESLALFMYQKPQTAKRLHFDVIPRAVDEYLTFVEKFPGQDEKTQLSSPAWHIHGGRPPVEKAHLSYSILLNLVSV
CNSDNPAVLWHYISRYAPGATPESAPMLAVLVERAITYYRDFVLPQKAYRKATAEEITALVDLRAVLTALPRPVEAEAAQ
TAVYEVGKRHEGLGDLKAWFQVLYQVLLGQDQGPRMGSFIALFGIEEMLDLLDKAISGSDVMGEPKLSVS

Specific function: Unknown

COG id: COG1384

COG function: function code J; Lysyl-tRNA synthetase (class I)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008925
- InterPro:   IPR020751
- InterPro:   IPR001412
- InterPro:   IPR002904
- InterPro:   IPR020754
- InterPro:   IPR020756
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01921 tRNA-synt_1f [H]

EC number: =6.1.1.6 [H]

Molecular weight: Translated: 61315; Mature: 61315

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTAFMPMMSLVPPAQDRALALSSSAWPFQEARALLEKRLKGTLPEKGYVLFETGYGPSG
CCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
LPHIGTFGEVVRTTMVRNAFRVIAPEMPARLFTFSDDMDGLRKVPDNIPNKEVVRPHLGK
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCC
PLTRIPDPFGTHPSFGQHNNARLRAFLDSFGFEYEFQSATDWYTSGRFDGALLRVLECHD
CHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCHHCCCCCCHHHHHHHHHHH
AIRDVVLPTLGEERRATYSPFLPICPETGVVLQVPVVSTDVKAGTLVYRREDGKEIETKV
HHHHHHCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEE
TGGACKLQWKADWGTRWYALGVDYEMSGKDLIDSVKLSSRICRILGGEPPQSLTYELFLD
CCCEEEEEEECCCCCEEEEEECCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
GQGQKISKSKGNGLSVEDWLRYANPESLALFMYQKPQTAKRLHFDVIPRAVDEYLTFVEK
CCCCEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
FPGQDEKTQLSSPAWHIHGGRPPVEKAHLSYSILLNLVSVCNSDNPAVLWHYISRYAPGA
CCCCCCHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCC
TPESAPMLAVLVERAITYYRDFVLPQKAYRKATAEEITALVDLRAVLTALPRPVEAEAAQ
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
TAVYEVGKRHEGLGDLKAWFQVLYQVLLGQDQGPRMGSFIALFGIEEMLDLLDKAISGSD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
VMGEPKLSVS
CCCCCCCCCC
>Mature Secondary Structure
MRTAFMPMMSLVPPAQDRALALSSSAWPFQEARALLEKRLKGTLPEKGYVLFETGYGPSG
CCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
LPHIGTFGEVVRTTMVRNAFRVIAPEMPARLFTFSDDMDGLRKVPDNIPNKEVVRPHLGK
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCC
PLTRIPDPFGTHPSFGQHNNARLRAFLDSFGFEYEFQSATDWYTSGRFDGALLRVLECHD
CHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCHHCCCCCCHHHHHHHHHHH
AIRDVVLPTLGEERRATYSPFLPICPETGVVLQVPVVSTDVKAGTLVYRREDGKEIETKV
HHHHHHCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEE
TGGACKLQWKADWGTRWYALGVDYEMSGKDLIDSVKLSSRICRILGGEPPQSLTYELFLD
CCCEEEEEEECCCCCEEEEEECCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
GQGQKISKSKGNGLSVEDWLRYANPESLALFMYQKPQTAKRLHFDVIPRAVDEYLTFVEK
CCCCEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
FPGQDEKTQLSSPAWHIHGGRPPVEKAHLSYSILLNLVSVCNSDNPAVLWHYISRYAPGA
CCCCCCHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCC
TPESAPMLAVLVERAITYYRDFVLPQKAYRKATAEEITALVDLRAVLTALPRPVEAEAAQ
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
TAVYEVGKRHEGLGDLKAWFQVLYQVLLGQDQGPRMGSFIALFGIEEMLDLLDKAISGSD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
VMGEPKLSVS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA