Click here to switch to the map view.

The map label for this gene is yicC [H]

Identifier: 83591768

GI number: 83591768

Start: 500608

End: 501495

Strand: Direct

Name: yicC [H]

Synonym: Rru_A0428

Alternate gene names: 83591768

Gene position: 500608-501495 (Clockwise)

Preceding gene: 83591759

Following gene: 83591769

Centisome position: 11.5

GC content: 69.14

Gene sequence:

>888_bases
ATGGCCCTTTCGAGCATGACCGGTTTTGCCCGTACCCAGGGGGCCCTGGGGCCGCAGACCTGGGTCTGGGAGGCGCGCAG
CGTCAATGGCAAGGGTCTGGATATCCGCCTGCGCCTGCCACCGGGCGGCGACGCCCTTGACCAGCCGGCCCGCCGCGCCG
TGGCCGAGCGTTTCAAGCGCGGTTCGATCTCGCTTGGCCTGACCATGACCAGCGACGATCAGGAACAGGCCTATCGGGTC
AATGAGCCGCTGCTCAAAAAGCTGCTGGCCGTGACCCGCGAGTTGGCGATGGACGGGGTGGACCGGCCGCGCATGGATGG
CCTGCTCGGGTTGCGCGGCGTGCTTGAACCGGTTGGCCAAGCCGAAGAGGAGGGCGTCCGCGAGGCCCGCGAGGCGGCCC
AGCTGCGCAGCCTGGAAGCCACCCTTGACGCCCTGGCCCTGGCGCGCAGCGAGGAAGGCGGGCGTCTGGCCGGGGTGCTG
GCGGGGCATCTCGAGGTTTTGGAAGACCTGCGCGCCCAGGCCGCCAACGCCGAGGCCCTGCGCCCCGACATGGTGCGCGC
CCGCCTGCGCCGTCAGATGGCCGACCTGCTTGAGGCCGCCCCCGATGCCCTGCCCGAGGAGCGGCTGGCCCAGGAACTGG
CCCTGCTGGCGGTCAAGGCCGATATCCGCGAAGAGCTTGATCGCCTGGGCGCCCACCTGGAAGGGGCGCGCGAGCTGCTT
ACCCGCGGCGAGGCGATGGGCCGGCGCTTGGAGTTCCTGTCCCAGGAGCTGAACCGCGAGGCCAACACCCTGTGCTCGAA
ATCCTCCGACGTCGCCTTGACCCGCATCGGGTTGGACATGAAGGCGGTGATCGACCAATTCCGCGAACAAATCCTCAATA
TCGAATAG

Upstream 100 bases:

>100_bases
GCCGCTCTAAGAGACTGATAGTCCAGCAAATCCCGGTCCTTGCGCGTGATGATCCTCATCGGGCGCGGGGTGATCGGCTT
CCTCCCCCGGAGTAGCGACC

Downstream 100 bases:

>100_bases
GACGGTTTTCCCATGTCGGCCCCTTCCTCCGCCCCCGCCCTCATCCCCCGGCGCGGTATGATGCTGGTTCTCTCCTCGCC
TTCCGGGGCGGGGAAGACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MALSSMTGFARTQGALGPQTWVWEARSVNGKGLDIRLRLPPGGDALDQPARRAVAERFKRGSISLGLTMTSDDQEQAYRV
NEPLLKKLLAVTRELAMDGVDRPRMDGLLGLRGVLEPVGQAEEEGVREAREAAQLRSLEATLDALALARSEEGGRLAGVL
AGHLEVLEDLRAQAANAEALRPDMVRARLRRQMADLLEAAPDALPEERLAQELALLAVKADIREELDRLGAHLEGARELL
TRGEAMGRRLEFLSQELNREANTLCSKSSDVALTRIGLDMKAVIDQFREQILNIE

Sequences:

>Translated_295_residues
MALSSMTGFARTQGALGPQTWVWEARSVNGKGLDIRLRLPPGGDALDQPARRAVAERFKRGSISLGLTMTSDDQEQAYRV
NEPLLKKLLAVTRELAMDGVDRPRMDGLLGLRGVLEPVGQAEEEGVREAREAAQLRSLEATLDALALARSEEGGRLAGVL
AGHLEVLEDLRAQAANAEALRPDMVRARLRRQMADLLEAAPDALPEERLAQELALLAVKADIREELDRLGAHLEGARELL
TRGEAMGRRLEFLSQELNREANTLCSKSSDVALTRIGLDMKAVIDQFREQILNIE
>Mature_294_residues
ALSSMTGFARTQGALGPQTWVWEARSVNGKGLDIRLRLPPGGDALDQPARRAVAERFKRGSISLGLTMTSDDQEQAYRVN
EPLLKKLLAVTRELAMDGVDRPRMDGLLGLRGVLEPVGQAEEEGVREAREAAQLRSLEATLDALALARSEEGGRLAGVLA
GHLEVLEDLRAQAANAEALRPDMVRARLRRQMADLLEAAPDALPEERLAQELALLAVKADIREELDRLGAHLEGARELLT
RGEAMGRRLEFLSQELNREANTLCSKSSDVALTRIGLDMKAVIDQFREQILNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=303, Percent_Identity=35.3135313531353, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 32354; Mature: 32223

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSSMTGFARTQGALGPQTWVWEARSVNGKGLDIRLRLPPGGDALDQPARRAVAERFKR
CCCCHHHHHHHHCCCCCCCHHEEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHC
GSISLGLTMTSDDQEQAYRVNEPLLKKLLAVTRELAMDGVDRPRMDGLLGLRGVLEPVGQ
CCEEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
AEEEGVREAREAAQLRSLEATLDALALARSEEGGRLAGVLAGHLEVLEDLRAQAANAEAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHC
RPDMVRARLRRQMADLLEAAPDALPEERLAQELALLAVKADIREELDRLGAHLEGARELL
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRGEAMGRRLEFLSQELNREANTLCSKSSDVALTRIGLDMKAVIDQFREQILNIE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALSSMTGFARTQGALGPQTWVWEARSVNGKGLDIRLRLPPGGDALDQPARRAVAERFKR
CCCHHHHHHHHCCCCCCCHHEEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHC
GSISLGLTMTSDDQEQAYRVNEPLLKKLLAVTRELAMDGVDRPRMDGLLGLRGVLEPVGQ
CCEEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
AEEEGVREAREAAQLRSLEATLDALALARSEEGGRLAGVLAGHLEVLEDLRAQAANAEAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHC
RPDMVRARLRRQMADLLEAAPDALPEERLAQELALLAVKADIREELDRLGAHLEGARELL
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRGEAMGRRLEFLSQELNREANTLCSKSSDVALTRIGLDMKAVIDQFREQILNIE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2664418; 7686882; 9278503; 1925027 [H]