Click here to switch to the map view.

The map label for this gene is ugpA [C]

Identifier: 83591433

GI number: 83591433

Start: 107196

End: 108065

Strand: Direct

Name: ugpA [C]

Synonym: Rru_A0093

Alternate gene names: 83591433

Gene position: 107196-108065 (Clockwise)

Preceding gene: 83591432

Following gene: 83591434

Centisome position: 2.46

GC content: 61.38

Gene sequence:

>870_bases
ATGCGCGACCTTGATCGTCTGATCCCCAAGCTGGTCATCGCCCCGTCGTTCGCCGCCGCCTTGCTGTTCGTCTATGGCTT
CATCGGCTGGACGGTTTACATCTCGTTCACCAAATCGGGCATCCTGCCACGCTATGAATTGGACGGCGTTGGGCAATACG
CCCGGTTGTTCGCCAATCCGCGCTGGGATGTGGCGGTGAGCAATCTGTTCGTTTTCGGCGGGCTGTTCATCGCCTTGTGT
TTGGTGATCGGCATCTTGTTGGCGATTCTGATCGACCAGAAGATCCGCGCCGAGGGCGTGCTGCGCACCATCTATCTGTA
TCCGATGGCGGTGTCGTTCATCGTGACCGGCACCGCCTGGAAATGGATCCTCAACCCCGGCCTGGGCCTTGATAAGGTCA
TGCACGGCCTGGGCTGGGAGGGGTTTTCCTTCGACTGGCTGATCAACCCCGAGAGGGCGATCTATACGGTGGTCATCGCC
GGGGTCTGGCAGTCGTCGGGCTTCGTCATGGCGCTGTTCCTGGCGGGCCTGCGGTCGTTCGATCAAGAGGTGATCAAGGC
GGCGACCATCGACGGCGCCGGCATGCCGACCGTCTATTTCCGCATCATCTTGCCGTCGCTGCATGCGGTGTTCTTGTCGG
CGGTGGTGGTGCTGGCCCATTTGGCGGTGAAAAGCTTCGATCTGGTGGTGGCCCTGACCGGTGGCGGGCCGGGCTATGCC
ACCGATATGCCGGCGACCTTCATGTATGCCATGGCCTTCCAGCGCAGCCAGCTTGGCACGGCGGCGGCCAGCGCGGTGAT
GATGCTGATGACGGTGATGGCCATCATCGTGCCCTATCTCTATTCCGAATTGCGGGAGCGCCGGTCATGA

Upstream 100 bases:

>100_bases
ATCCTCGGCCGAGGCCGTGGCCCATCTCGCCGACTCCATCGCCCAGGCCCGTTAGGGCTTTGGGCGCAAAAGCGGGTACC
GGTTGTGGAGGGGAGCCCCC

Downstream 100 bases:

>100_bases
GGGATGGCAGTATCAGGGACGCCGGGCCGCCCTTGCCCGCACCGCCGCCACCGCGCGCCGCGCCGATCGCCGGCCAAAGC
GCCGGGGGGCGTCTCGCGCT

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRDLDRLIPKLVIAPSFAAALLFVYGFIGWTVYISFTKSGILPRYELDGVGQYARLFANPRWDVAVSNLFVFGGLFIALC
LVIGILLAILIDQKIRAEGVLRTIYLYPMAVSFIVTGTAWKWILNPGLGLDKVMHGLGWEGFSFDWLINPERAIYTVVIA
GVWQSSGFVMALFLAGLRSFDQEVIKAATIDGAGMPTVYFRIILPSLHAVFLSAVVVLAHLAVKSFDLVVALTGGGPGYA
TDMPATFMYAMAFQRSQLGTAAASAVMMLMTVMAIIVPYLYSELRERRS

Sequences:

>Translated_289_residues
MRDLDRLIPKLVIAPSFAAALLFVYGFIGWTVYISFTKSGILPRYELDGVGQYARLFANPRWDVAVSNLFVFGGLFIALC
LVIGILLAILIDQKIRAEGVLRTIYLYPMAVSFIVTGTAWKWILNPGLGLDKVMHGLGWEGFSFDWLINPERAIYTVVIA
GVWQSSGFVMALFLAGLRSFDQEVIKAATIDGAGMPTVYFRIILPSLHAVFLSAVVVLAHLAVKSFDLVVALTGGGPGYA
TDMPATFMYAMAFQRSQLGTAAASAVMMLMTVMAIIVPYLYSELRERRS
>Mature_289_residues
MRDLDRLIPKLVIAPSFAAALLFVYGFIGWTVYISFTKSGILPRYELDGVGQYARLFANPRWDVAVSNLFVFGGLFIALC
LVIGILLAILIDQKIRAEGVLRTIYLYPMAVSFIVTGTAWKWILNPGLGLDKVMHGLGWEGFSFDWLINPERAIYTVVIA
GVWQSSGFVMALFLAGLRSFDQEVIKAATIDGAGMPTVYFRIILPSLHAVFLSAVVVLAHLAVKSFDLVVALTGGGPGYA
TDMPATFMYAMAFQRSQLGTAAASAVMMLMTVMAIIVPYLYSELRERRS

Specific function: Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=288, Percent_Identity=27.7777777777778, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787570, Length=255, Percent_Identity=25.0980392156863, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790465, Length=220, Percent_Identity=25.9090909090909, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31741; Mature: 31741

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50928 ABC_TM1 ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLDRLIPKLVIAPSFAAALLFVYGFIGWTVYISFTKSGILPRYELDGVGQYARLFANP
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEHHCCCCCCCCCCCCHHHHHHHCCC
RWDVAVSNLFVFGGLFIALCLVIGILLAILIDQKIRAEGVLRTIYLYPMAVSFIVTGTAW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KWILNPGLGLDKVMHGLGWEGFSFDWLINPERAIYTVVIAGVWQSSGFVMALFLAGLRSF
EEEECCCCCHHHHHHHCCCCCCCEEEEECCCHHEEHHHEEHHHCCCCHHHHHHHHHHHHH
DQEVIKAATIDGAGMPTVYFRIILPSLHAVFLSAVVVLAHLAVKSFDLVVALTGGGPGYA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCC
TDMPATFMYAMAFQRSQLGTAAASAVMMLMTVMAIIVPYLYSELRERRS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRDLDRLIPKLVIAPSFAAALLFVYGFIGWTVYISFTKSGILPRYELDGVGQYARLFANP
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEHHCCCCCCCCCCCCHHHHHHHCCC
RWDVAVSNLFVFGGLFIALCLVIGILLAILIDQKIRAEGVLRTIYLYPMAVSFIVTGTAW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KWILNPGLGLDKVMHGLGWEGFSFDWLINPERAIYTVVIAGVWQSSGFVMALFLAGLRSF
EEEECCCCCHHHHHHHCCCCCCCEEEEECCCHHEEHHHEEHHHCCCCHHHHHHHHHHHHH
DQEVIKAATIDGAGMPTVYFRIILPSLHAVFLSAVVVLAHLAVKSFDLVVALTGGGPGYA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCC
TDMPATFMYAMAFQRSQLGTAAASAVMMLMTVMAIIVPYLYSELRERRS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]