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The map label for this gene is yebC [C]

Identifier: 161777627

GI number: 161777627

Start: 1276715

End: 1277464

Strand: Direct

Name: yebC [C]

Synonym: Rru_A1086

Alternate gene names: 161777627

Gene position: 1276715-1277464 (Clockwise)

Preceding gene: 83592421

Following gene: 83592423

Centisome position: 29.33

GC content: 64.0

Gene sequence:

>750_bases
ATGGCCGGTCATTCCCAATTCAAGAACATCATGCACCGCAAAGGCGGTCAGGATGCCAAGCGCGCCCAGCTTTTCACCAA
ACTGGCCCGTGAAATCACCGTTTCGGCCAAGCTCGGATCACCCGATCCGAACGCCAATCCGCGGCTGCGCGCCGCTATTC
TCGCCGCCCGCGCCCAGTCGCTGCCCAAGGATAATATCCAGCGGGCGATCGACAAGGCGACCAGCGGCGGCGATGCGGCC
AACCTCGAGGAACTGCGCTACGAGGGCTATGGTCCGGGCAATGTGGCGGTCATCGTCGAATGCCTGACCGACAACCGCAA
CCGCACCGCCTCGGAAGTGCGGACCGCCTTCAGCAAGAACGGCGGCACCATGGGCGAAAGCGGCTCGGTGGCCTTCAACT
TCGAGCGTGTCGGCCTGATCCATTATCCGCTGAAGGCCGGGGCGGCCGACGCCGTGCTTGATGCCGGCATCGAGGCCGGG
GCCGACGACGTGCAGTCGAGCGAGGATGGCCACGACATCACCTGCCGGCCCGATGATCTCAACGCCGTCTCCAAGGCCCT
GGAAGCGGCCCTGGGCGATCCGGAGTTCGCCCGCCTTGACTGGAAGCCGCTGGTTCAGGTGCCCGTTGACGCCGATACCG
TGCCGGCGCTGATGAAATTCCTCGACATCCTCGATGACTGCGACGATGTGCAAAGGGTCGCGGCCAATTACGAGATCGAC
GACGCGATCATGGAGAAACTGGGGGCATGA

Upstream 100 bases:

>100_bases
CGATCGCCAAGCCCCGCGCGGCTTGGGCGGCTCCTGTCCAAGGACCGCACCCTGTGGGTGGATGAGGCCCCGCAACCCAC
GAGATATAGAGCGATCGACG

Downstream 100 bases:

>100_bases
GACTCCTGGGGCTGGATCCCGGTCTGCGGATTACCGGCTGGGGGGTGATCGAGGTGACGGGCAACCGCATCGGCCATGTG
GCCGATGGGGTGGTGCGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MAGHSQFKNIMHRKGGQDAKRAQLFTKLAREITVSAKLGSPDPNANPRLRAAILAARAQSLPKDNIQRAIDKATSGGDAA
NLEELRYEGYGPGNVAVIVECLTDNRNRTASEVRTAFSKNGGTMGESGSVAFNFERVGLIHYPLKAGAADAVLDAGIEAG
ADDVQSSEDGHDITCRPDDLNAVSKALEAALGDPEFARLDWKPLVQVPVDADTVPALMKFLDILDDCDDVQRVAANYEID
DAIMEKLGA

Sequences:

>Translated_249_residues
MAGHSQFKNIMHRKGGQDAKRAQLFTKLAREITVSAKLGSPDPNANPRLRAAILAARAQSLPKDNIQRAIDKATSGGDAA
NLEELRYEGYGPGNVAVIVECLTDNRNRTASEVRTAFSKNGGTMGESGSVAFNFERVGLIHYPLKAGAADAVLDAGIEAG
ADDVQSSEDGHDITCRPDDLNAVSKALEAALGDPEFARLDWKPLVQVPVDADTVPALMKFLDILDDCDDVQRVAANYEID
DAIMEKLGA
>Mature_248_residues
AGHSQFKNIMHRKGGQDAKRAQLFTKLAREITVSAKLGSPDPNANPRLRAAILAARAQSLPKDNIQRAIDKATSGGDAAN
LEELRYEGYGPGNVAVIVECLTDNRNRTASEVRTAFSKNGGTMGESGSVAFNFERVGLIHYPLKAGAADAVLDAGIEAGA
DDVQSSEDGHDITCRPDDLNAVSKALEAALGDPEFARLDWKPLVQVPVDADTVPALMKFLDILDDCDDVQRVAANYEIDD
AIMEKLGA

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=245, Percent_Identity=27.3469387755102, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1788171, Length=248, Percent_Identity=47.1774193548387, Blast_Score=234, Evalue=5e-63,
Organism=Escherichia coli, GI1788294, Length=235, Percent_Identity=36.5957446808511, Blast_Score=137, Evalue=6e-34,
Organism=Caenorhabditis elegans, GI17556100, Length=252, Percent_Identity=24.2063492063492, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6321458, Length=267, Percent_Identity=33.7078651685393, Blast_Score=112, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24583305, Length=249, Percent_Identity=28.1124497991968, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1086_RHORT (Q2RVF8)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_426174.2
- ProteinModelPortal:   Q2RVF8
- SMR:   Q2RVF8
- STRING:   Q2RVF8
- GeneID:   3833393
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A1086
- NMPDR:   fig|1085.1.peg.3285
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- PhylomeDB:   Q2RVF8
- ProtClustDB:   PRK00110
- BioCyc:   RRUB269796:RRU_A1086-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26604; Mature: 26473

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSQFKNIMHRKGGQDAKRAQLFTKLAREITVSAKLGSPDPNANPRLRAAILAARAQS
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHC
LPKDNIQRAIDKATSGGDAANLEELRYEGYGPGNVAVIVECLTDNRNRTASEVRTAFSKN
CCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEEHHCCCCCHHHHHHHHHHCC
GGTMGESGSVAFNFERVGLIHYPLKAGAADAVLDAGIEAGADDVQSSEDGHDITCRPDDL
CCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCHHHCCCCCCCEEEECCCHH
NAVSKALEAALGDPEFARLDWKPLVQVPVDADTVPALMKFLDILDDCDDVQRVAANYEID
HHHHHHHHHHHCCCCCEECCCCCEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHH
DAIMEKLGA
HHHHHHHCC
>Mature Secondary Structure 
AGHSQFKNIMHRKGGQDAKRAQLFTKLAREITVSAKLGSPDPNANPRLRAAILAARAQS
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHC
LPKDNIQRAIDKATSGGDAANLEELRYEGYGPGNVAVIVECLTDNRNRTASEVRTAFSKN
CCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEEHHCCCCCHHHHHHHHHHCC
GGTMGESGSVAFNFERVGLIHYPLKAGAADAVLDAGIEAGADDVQSSEDGHDITCRPDDL
CCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCHHHCCCCCCCEEEECCCHH
NAVSKALEAALGDPEFARLDWKPLVQVPVDADTVPALMKFLDILDDCDDVQRVAANYEID
HHHHHHHHHHHCCCCCEECCCCCEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHH
DAIMEKLGA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA