Definition Magnetospirillum magneticum AMB-1 chromosome, complete genome.
Accession NC_007626
Length 4,967,148

Click here to switch to the map view.

The map label for this gene is cmk

Identifier: 83313361

GI number: 83313361

Start: 4672742

End: 4673377

Strand: Reverse

Name: cmk

Synonym: amb4262

Alternate gene names: 83313361

Gene position: 4673377-4672742 (Counterclockwise)

Preceding gene: 83313362

Following gene: 83313360

Centisome position: 94.09

GC content: 69.34

Gene sequence:

>636_bases
GTGAGCACTATCATCGCCATCGACGGCCCCGCGGCGGCCGGCAAGGGGACTCTGGCGCGGCGTCTGGCCGCTGAATTGGG
CTTCGACTATCTCGACACCGGCCTGATCTATCGCGCCGTGGGCATGAAGCTGGCCCGCGCCGGGCTCGACCCCGCCGACG
TGGCCCTGGCCGAGCGGGCGGCCCGGCAGCTGTCGCCGGATGACCTGGCCGCCACCGATCTGCGCATCGACGAAGCCGCC
CAGGCGGCGTCCAAGGTGGCTTCCATTCCCGGCGTGCGCGCCGCTTTGCTGGACTTCCAGCGCCGCTTCGCCGCCACTCC
GCCGGGGGGCAAGGGGGCCGTGCTCGACGGCCGCGACATCGGGACCGTGGTCTGTCCCGAGGCGCAGGTAAAGTTGTTCG
TCACGGCCAGCGTGGAAAAAAGGGCCGAGCGACGGCTGAAAGAGTTGCAGGAAAAGGGCCTGGGGGCTATATACGGCACC
GTCCTGGCCGACATGCGGGAACGTGACGAGCGCGATACCAACCGCGCGGTCGCCCCGCTGGTTCCGGCCCAGGATGCCGC
CGTGCTGGATACCTCCGACCTCGATGCCGATCAGGCTTTTGCCGCCGCGCTGGGGATCATCGGTTCCAAACGGTAG

Upstream 100 bases:

>100_bases
GGCCCGTGGCCGTGGACGATTCCGAAGCCATCGACACCAGCTTCCCCGCCTTCGTCGAACTGATGAACGGGCTGGGGGCG
AAGATTTCCGGAGACAATCC

Downstream 100 bases:

>100_bases
CATTCAGAACCTGTTGACGCCGCCCGGGCAACCCTGGGCGGTGGTTTTCTTTTTTGAGAAACGTCCTTTTTTACGCAAAG
ACCGCCGGATTCAACCGGCA

Product: cytidylate kinase

Products: NA

Alternate protein names: CK; Cytidine monophosphate kinase; CMP kinase

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSTIIAIDGPAAAGKGTLARRLAAELGFDYLDTGLIYRAVGMKLARAGLDPADVALAERAARQLSPDDLAATDLRIDEAA
QAASKVASIPGVRAALLDFQRRFAATPPGGKGAVLDGRDIGTVVCPEAQVKLFVTASVEKRAERRLKELQEKGLGAIYGT
VLADMRERDERDTNRAVAPLVPAQDAAVLDTSDLDADQAFAAALGIIGSKR

Sequences:

>Translated_211_residues
MSTIIAIDGPAAAGKGTLARRLAAELGFDYLDTGLIYRAVGMKLARAGLDPADVALAERAARQLSPDDLAATDLRIDEAA
QAASKVASIPGVRAALLDFQRRFAATPPGGKGAVLDGRDIGTVVCPEAQVKLFVTASVEKRAERRLKELQEKGLGAIYGT
VLADMRERDERDTNRAVAPLVPAQDAAVLDTSDLDADQAFAAALGIIGSKR
>Mature_210_residues
STIIAIDGPAAAGKGTLARRLAAELGFDYLDTGLIYRAVGMKLARAGLDPADVALAERAARQLSPDDLAATDLRIDEAAQ
AASKVASIPGVRAALLDFQRRFAATPPGGKGAVLDGRDIGTVVCPEAQVKLFVTASVEKRAERRLKELQEKGLGAIYGTV
LADMRERDERDTNRAVAPLVPAQDAAVLDTSDLDADQAFAAALGIIGSKR

Specific function: ATP, Datp, And GTP Are Equally Effective As Phosphate Donors. CMP And Dcmp Are The Best Phosphate Acceptors. [C]

COG id: COG0283

COG function: function code F; Cytidylate kinase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidylate kinase family. Type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1787139, Length=218, Percent_Identity=44.0366972477064, Blast_Score=157, Evalue=5e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KCY_MAGSA (Q2VZA9)

Other databases:

- EMBL:   AP007255
- RefSeq:   YP_423625.1
- HSSP:   P0A6I0
- ProteinModelPortal:   Q2VZA9
- SMR:   Q2VZA9
- STRING:   Q2VZA9
- GeneID:   3802777
- GenomeReviews:   AP007255_GR
- KEGG:   mag:amb4262
- NMPDR:   fig|342108.5.peg.3831
- eggNOG:   COG0283
- HOGENOM:   HBG354377
- OMA:   DIGTVIC
- PhylomeDB:   Q2VZA9
- ProtClustDB:   CLSK745275
- BioCyc:   MMAG342108:AMB4262-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00238
- InterPro:   IPR003136
- InterPro:   IPR011994
- PANTHER:   PTHR21299:SF2
- TIGRFAMs:   TIGR00017

Pfam domain/function: PF02224 Cytidylate_kin

EC number: =2.7.4.14

Molecular weight: Translated: 22094; Mature: 21963

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIIAIDGPAAAGKGTLARRLAAELGFDYLDTGLIYRAVGMKLARAGLDPADVALAERA
CCEEEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ARQLSPDDLAATDLRIDEAAQAASKVASIPGVRAALLDFQRRFAATPPGGKGAVLDGRDI
HHHCCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCC
GTVVCPEAQVKLFVTASVEKRAERRLKELQEKGLGAIYGTVLADMRERDERDTNRAVAPL
CEEECCCCEEEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
VPAQDAAVLDTSDLDADQAFAAALGIIGSKR
CCCCCCEEECCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STIIAIDGPAAAGKGTLARRLAAELGFDYLDTGLIYRAVGMKLARAGLDPADVALAERA
CEEEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ARQLSPDDLAATDLRIDEAAQAASKVASIPGVRAALLDFQRRFAATPPGGKGAVLDGRDI
HHHCCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCC
GTVVCPEAQVKLFVTASVEKRAERRLKELQEKGLGAIYGTVLADMRERDERDTNRAVAPL
CEEECCCCEEEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
VPAQDAAVLDTSDLDADQAFAAALGIIGSKR
CCCCCCEEECCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA