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The map label for this gene is aer [H]

Identifier: 83313108

GI number: 83313108

Start: 4416121

End: 4416645

Strand: Reverse

Name: aer [H]

Synonym: amb4009

Alternate gene names: 83313108

Gene position: 4416645-4416121 (Counterclockwise)

Preceding gene: 83313114

Following gene: 83313107

Centisome position: 88.92

GC content: 61.33

Gene sequence:

>525_bases
GTGAGTAGCAGGACCATTCAGCCATCGGGAAAAGAGCGGACTTTCGCCGAGGACGAAATCATCGTCAGCAAGACCGATAC
CAAAGGGCGTCTCACCTATGTGAACGACGTGTTCCTCAGCGTTTCGGGCTTCACCGAGGCCGAACTGATCGGCCAGCCGC
ACAGCATGATCCGGCATCCCGAGATGCCGCGCTGCGTGTTCAAGCTGCTGTGGGACACCATCGCCTCGGGCAAGGAACTG
TTCGCCTATGTGGTCAATCTGGCCAAGACCGGCGAGCATTACTGGGTCCTGGCCCACGTCACCCCGGATTTCGGTCCCGA
CGGCCAGATCGTCGGCTACCATTCCAATCGCCGCGTGCCGCGTCGCGACGCGCTTGCCAAAGTTCAGCCCCTGTACCAGA
GCCTGCTGAAGATCGAGGAGGCCGCCGCCGACCGCAAGCAGGGCATGGAGGCGGCGTTCGCCGCCCTGGTCGACCAGTTG
AAGCGCGAAGGAAAGCCCTATGCAGAATTTGTCCTCGGTCTCTAA

Upstream 100 bases:

>100_bases
TACGAAGATACACGGAGCGTGTTGATTTGTTATTATCCTGTTGATATCTATTCTCATGACAGGGTGTGCGGGAACTACGT
CGTAAGGGGGGGGTAGGCGA

Downstream 100 bases:

>100_bases
GGCCCGGCGGGCCTGCCAGATCACCTTCGGGCTGGCCCTTGCCCTGGTTCTCGTCGCCCTGCTGCTGCAGAACTGGGTGG
CGGCGGGCTTTGCCGTGGTC

Product: PAS/PAC domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSSRTIQPSGKERTFAEDEIIVSKTDTKGRLTYVNDVFLSVSGFTEAELIGQPHSMIRHPEMPRCVFKLLWDTIASGKEL
FAYVVNLAKTGEHYWVLAHVTPDFGPDGQIVGYHSNRRVPRRDALAKVQPLYQSLLKIEEAAADRKQGMEAAFAALVDQL
KREGKPYAEFVLGL

Sequences:

>Translated_174_residues
MSSRTIQPSGKERTFAEDEIIVSKTDTKGRLTYVNDVFLSVSGFTEAELIGQPHSMIRHPEMPRCVFKLLWDTIASGKEL
FAYVVNLAKTGEHYWVLAHVTPDFGPDGQIVGYHSNRRVPRRDALAKVQPLYQSLLKIEEAAADRKQGMEAAFAALVDQL
KREGKPYAEFVLGL
>Mature_173_residues
SSRTIQPSGKERTFAEDEIIVSKTDTKGRLTYVNDVFLSVSGFTEAELIGQPHSMIRHPEMPRCVFKLLWDTIASGKELF
AYVVNLAKTGEHYWVLAHVTPDFGPDGQIVGYHSNRRVPRRDALAKVQPLYQSLLKIEEAAADRKQGMEAAFAALVDQLK
REGKPYAEFVLGL

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=121, Percent_Identity=42.1487603305785, Blast_Score=109, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 19523; Mature: 19391

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRTIQPSGKERTFAEDEIIVSKTDTKGRLTYVNDVFLSVSGFTEAELIGQPHSMIRHP
CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCHHHHCCCCHHHHCCC
EMPRCVFKLLWDTIASGKELFAYVVNLAKTGEHYWVLAHVTPDFGPDGQIVGYHSNRRVP
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEECCCCCCC
RRDALAKVQPLYQSLLKIEEAAADRKQGMEAAFAALVDQLKREGKPYAEFVLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure 
SSRTIQPSGKERTFAEDEIIVSKTDTKGRLTYVNDVFLSVSGFTEAELIGQPHSMIRHP
CCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCHHHHCCCCHHHHCCC
EMPRCVFKLLWDTIASGKELFAYVVNLAKTGEHYWVLAHVTPDFGPDGQIVGYHSNRRVP
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEECCCCCCC
RRDALAKVQPLYQSLLKIEEAAADRKQGMEAAFAALVDQLKREGKPYAEFVLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]