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The map label for this gene is dcrA [H]

Identifier: 83313107

GI number: 83313107

Start: 4414848

End: 4416146

Strand: Reverse

Name: dcrA [H]

Synonym: amb4008

Alternate gene names: 83313107

Gene position: 4416146-4414848 (Counterclockwise)

Preceding gene: 83313108

Following gene: 83313106

Centisome position: 88.91

GC content: 67.9

Gene sequence:

>1299_bases
ATGCAGAATTTGTCCTCGGTCTCTAAGGCCCGGCGGGCCTGCCAGATCACCTTCGGGCTGGCCCTTGCCCTGGTTCTCGT
CGCCCTGCTGCTGCAGAACTGGGTGGCGGCGGGCTTTGCCGTGGTCCTGGCCATCCCGGCCTGGATCCCCGTCGGCCTGC
TCAACCGCAGCAACGCCAGCATCGAAAAGGCCGCCCAGGTCTGCGCCGCCGCCGCCCAGGGCAATCTCGGCGTCCGCATC
ATGGACATCAAGGGCCAGGGCAATATCGGCCAGATGCTGCGCTCCATCAACCGGCTGCTGGACCTGACCGAGGCCTATTG
CCGCGAATCCCAGGCGGCCATGGAGCACGCCAACCAGCGGCAGTACTTCCGCAAGATCATTCCGACCGGCTTGCGCGGCG
ACTTTGCCCGCTATGCCGGGATCATCAACACCTCCCTGGATCTGATGAAGGGGCGGGACGCCGACGCGTTGAACTTCGCC
GAGCAGAATGTCCGTGTCCTGGTGCAGGAGGTGTCGTCCGCCTCGACCCAGCTGCGCCAAAGCTCGGACCGGCTGATGAA
CAACGCCACCCAGACCGTCGAGCAGGCCATGACCTCGGCCGCCGCCGCCGAGGAGGCCTCGGTCAACGTCCAGTCGGTGG
CCGGCGCCGCCGAGGAGCTTGCCGCGTCTTTCGGCGAGATCAACATGCAGACCACCCGCGCCACGGCCATTTCGTCCGAG
GCCATGGTCACCGCCCAGCGCACCGACCAGACGGTGCAGGACCTGGGTCATGCCGCCGCCCAGATCGGCTCGGTGCTGTC
CCTCATTCAGGACATCGCGTCGCAGACCAATCTGCTGGCGCTCAACGCCACCATCGAGGCGGCGCGGGCGGGCGAGGCGG
GGAAAGGTTTTGCCGTGGTGGCCAACGAGGTCAAGACCCTCGCCAACCAGACCGCCCGGGCCACCGAGGAAATCTCGGCC
CATGTCAGCCAGATCCAACTGGCCTCGGAAGGCGCCGCCGCCGCCATCCGCGAGATCGCCCAGATCGTCGGCACCATCCA
GGAGACCTCCACCGCCGTGGCCGGCGCCGTGGAGGAGCAGAACGCGGTGACCATGGAAATCTCGCGCAATGTCCAGGAGG
CCGCTACCGGCACCGCGTCGGTGTCCGAGGCGGTGGCCTATGTGAAGGATACCGCCGAGACCACCGACCAGGAGGCCCGC
GAGATCTCCGCCGCCGCCGCCAGCCTGGCGGCGCGGGCCGACGACCTGGAAGCCCAGATCGGCGGCTTCATCGCCAAGAT
CAAGGGGCAGGCCGCCTGA

Upstream 100 bases:

>100_bases
AGCCTGCTGAAGATCGAGGAGGCCGCCGCCGACCGCAAGCAGGGCATGGAGGCGGCGTTCGCCGCCCTGGTCGACCAGTT
GAAGCGCGAAGGAAAGCCCT

Downstream 100 bases:

>100_bases
TTGTTTCCCCTCTGCCGCATGCCCATGTATGGGGCTGCGGCAGAGAGGAGATGCGCCCATGACCGATCCCGTCATCGCCC
AGAAGGCGCCCTATCCCGTT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MQNLSSVSKARRACQITFGLALALVLVALLLQNWVAAGFAVVLAIPAWIPVGLLNRSNASIEKAAQVCAAAAQGNLGVRI
MDIKGQGNIGQMLRSINRLLDLTEAYCRESQAAMEHANQRQYFRKIIPTGLRGDFARYAGIINTSLDLMKGRDADALNFA
EQNVRVLVQEVSSASTQLRQSSDRLMNNATQTVEQAMTSAAAAEEASVNVQSVAGAAEELAASFGEINMQTTRATAISSE
AMVTAQRTDQTVQDLGHAAAQIGSVLSLIQDIASQTNLLALNATIEAARAGEAGKGFAVVANEVKTLANQTARATEEISA
HVSQIQLASEGAAAAIREIAQIVGTIQETSTAVAGAVEEQNAVTMEISRNVQEAATGTASVSEAVAYVKDTAETTDQEAR
EISAAAASLAARADDLEAQIGGFIAKIKGQAA

Sequences:

>Translated_432_residues
MQNLSSVSKARRACQITFGLALALVLVALLLQNWVAAGFAVVLAIPAWIPVGLLNRSNASIEKAAQVCAAAAQGNLGVRI
MDIKGQGNIGQMLRSINRLLDLTEAYCRESQAAMEHANQRQYFRKIIPTGLRGDFARYAGIINTSLDLMKGRDADALNFA
EQNVRVLVQEVSSASTQLRQSSDRLMNNATQTVEQAMTSAAAAEEASVNVQSVAGAAEELAASFGEINMQTTRATAISSE
AMVTAQRTDQTVQDLGHAAAQIGSVLSLIQDIASQTNLLALNATIEAARAGEAGKGFAVVANEVKTLANQTARATEEISA
HVSQIQLASEGAAAAIREIAQIVGTIQETSTAVAGAVEEQNAVTMEISRNVQEAATGTASVSEAVAYVKDTAETTDQEAR
EISAAAASLAARADDLEAQIGGFIAKIKGQAA
>Mature_432_residues
MQNLSSVSKARRACQITFGLALALVLVALLLQNWVAAGFAVVLAIPAWIPVGLLNRSNASIEKAAQVCAAAAQGNLGVRI
MDIKGQGNIGQMLRSINRLLDLTEAYCRESQAAMEHANQRQYFRKIIPTGLRGDFARYAGIINTSLDLMKGRDADALNFA
EQNVRVLVQEVSSASTQLRQSSDRLMNNATQTVEQAMTSAAAAEEASVNVQSVAGAAEELAASFGEINMQTTRATAISSE
AMVTAQRTDQTVQDLGHAAAQIGSVLSLIQDIASQTNLLALNATIEAARAGEAGKGFAVVANEVKTLANQTARATEEISA
HVSQIQLASEGAAAAIREIAQIVGTIQETSTAVAGAVEEQNAVTMEISRNVQEAATGTASVSEAVAYVKDTAETTDQEAR
EISAAAASLAARADDLEAQIGGFIAKIKGQAA

Specific function: Signal Transducer For Aerotaxis. The Aerotactic Response Is The Accumulation Of Cells Around Air Bubbles. The Nature Of The Sensory Stimulus Detected By This Protein Is The Proton Motive Force Or Cellular Redox State. It Uses A FAD Prosthetic Group As A R

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=269, Percent_Identity=32.7137546468402, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788194, Length=227, Percent_Identity=30.3964757709251, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787690, Length=231, Percent_Identity=32.4675324675325, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI2367378, Length=231, Percent_Identity=30.3030303030303, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1788195, Length=214, Percent_Identity=29.9065420560748, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 45155; Mature: 45155

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLSSVSKARRACQITFGLALALVLVALLLQNWVAAGFAVVLAIPAWIPVGLLNRSNAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
IEKAAQVCAAAAQGNLGVRIMDIKGQGNIGQMLRSINRLLDLTEAYCRESQAAMEHANQR
HHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYFRKIIPTGLRGDFARYAGIINTSLDLMKGRDADALNFAEQNVRVLVQEVSSASTQLRQ
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SSDRLMNNATQTVEQAMTSAAAAEEASVNVQSVAGAAEELAASFGEINMQTTRATAISSE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AMVTAQRTDQTVQDLGHAAAQIGSVLSLIQDIASQTNLLALNATIEAARAGEAGKGFAVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCHHHH
ANEVKTLANQTARATEEISAHVSQIQLASEGAAAAIREIAQIVGTIQETSTAVAGAVEEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NAVTMEISRNVQEAATGTASVSEAVAYVKDTAETTDQEAREISAAAASLAARADDLEAQI
CCEEEHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGFIAKIKGQAA
HHHHHHHCCCCC
>Mature Secondary Structure
MQNLSSVSKARRACQITFGLALALVLVALLLQNWVAAGFAVVLAIPAWIPVGLLNRSNAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
IEKAAQVCAAAAQGNLGVRIMDIKGQGNIGQMLRSINRLLDLTEAYCRESQAAMEHANQR
HHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYFRKIIPTGLRGDFARYAGIINTSLDLMKGRDADALNFAEQNVRVLVQEVSSASTQLRQ
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SSDRLMNNATQTVEQAMTSAAAAEEASVNVQSVAGAAEELAASFGEINMQTTRATAISSE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AMVTAQRTDQTVQDLGHAAAQIGSVLSLIQDIASQTNLLALNATIEAARAGEAGKGFAVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCHHHH
ANEVKTLANQTARATEEISAHVSQIQLASEGAAAAIREIAQIVGTIQETSTAVAGAVEEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NAVTMEISRNVQEAATGTASVSEAVAYVKDTAETTDQEAREISAAAASLAARADDLEAQI
CCEEEHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGFIAKIKGQAA
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]