| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is yhhW [C]
Identifier: 83313096
GI number: 83313096
Start: 4406237
End: 4406938
Strand: Reverse
Name: yhhW [C]
Synonym: amb3997
Alternate gene names: 83313096
Gene position: 4406938-4406237 (Counterclockwise)
Preceding gene: 83313100
Following gene: 83313089
Centisome position: 88.72
GC content: 66.38
Gene sequence:
>702_bases ATGACCCTCCGCCTTCGTCCCTCCGCCCAGCGCGGGCATGCCAATCACGGCTGGCTGGACAGCCGCCATACCTTCTCGTT CGCCGACTATTTCGACCCGGCCCAGATGGGCTTTCGGGCGCTTCGGGTGATCAACGAGGATTGGGTGGCGCCGCAAACGG GCTTCGACACCCATCCCCACCGCGACATGGAGATCCTCACCTATGTGATCGCCGGGGCGGTGGAGCATAAGGACAGCACC GGAGCCCACGGCATCACCCGCCGGGGTGAGATTCAGGCCATGACCGCCGGCACCGGTATCCGCCATTCCGAGATGAACCC CCTGGCCGACCAGATTCTGCATCTGCTGCAGATATGGATTCTGCCCGAGGCGCAGCGCCTGACTCCCGGCTACAGCCAGA CGGTGTTCGACGACGAGTCCAAGCGCGACCGGCTGCGGCTGATTGCGTCGCGGGACGGCCGGGACGGCTCGTTGGTCCTA CATCAGGACGTGGCCATCCACGCCAGCATCCTGAGCCCCGGGCATACCCTCTCCCACCAATTGGTGGCGGGGCGCGGCGC CTGGGTCCAGGTTGTCGCCGGCACTTTGGTGCTCAACGGCCAGGTGCTGGCCGCCGGTGACGGCGCCGCCATGGAGGACG AGGCGATGCTGACCCTGACCAGTGAAAGCGGCGCCGAGTTCCTGCTGTTCGATCTGGCGTGA
Upstream 100 bases:
>100_bases TCTGTTGCTGCAACAGTATTGTTCCAATGGCGGTGATTGTTGAATTTACCTCCAGGGCCTATGTGTTGATCCAGTGACGC CCTTCACCTGGAGAACGACC
Downstream 100 bases:
>100_bases GCGCCCTATTGGGCTATCGCCCAAGCCCATCCGGGGCGATGCCCCGGTCCCCCTTTTGATTCATGAATGAAAGGGAGGCT TGGAAGCGTTGCCTCCAACC
Product: Pirin-related protein
Products: NA
Alternate protein names: Putative quercetinase; Pirin-like protein sll1773 [H]
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MTLRLRPSAQRGHANHGWLDSRHTFSFADYFDPAQMGFRALRVINEDWVAPQTGFDTHPHRDMEILTYVIAGAVEHKDST GAHGITRRGEIQAMTAGTGIRHSEMNPLADQILHLLQIWILPEAQRLTPGYSQTVFDDESKRDRLRLIASRDGRDGSLVL HQDVAIHASILSPGHTLSHQLVAGRGAWVQVVAGTLVLNGQVLAAGDGAAMEDEAMLTLTSESGAEFLLFDLA
Sequences:
>Translated_233_residues MTLRLRPSAQRGHANHGWLDSRHTFSFADYFDPAQMGFRALRVINEDWVAPQTGFDTHPHRDMEILTYVIAGAVEHKDST GAHGITRRGEIQAMTAGTGIRHSEMNPLADQILHLLQIWILPEAQRLTPGYSQTVFDDESKRDRLRLIASRDGRDGSLVL HQDVAIHASILSPGHTLSHQLVAGRGAWVQVVAGTLVLNGQVLAAGDGAAMEDEAMLTLTSESGAEFLLFDLA >Mature_232_residues TLRLRPSAQRGHANHGWLDSRHTFSFADYFDPAQMGFRALRVINEDWVAPQTGFDTHPHRDMEILTYVIAGAVEHKDSTG AHGITRRGEIQAMTAGTGIRHSEMNPLADQILHLLQIWILPEAQRLTPGYSQTVFDDESKRDRLRLIASRDGRDGSLVLH QDVAIHASILSPGHTLSHQLVAGRGAWVQVVAGTLVLNGQVLAAGDGAAMEDEAMLTLTSESGAEFLLFDLA
Specific function: Putative quercetin 2,3-dioxygenase [H]
COG id: COG1741
COG function: function code R; Pirin-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pirin family [H]
Homologues:
Organism=Escherichia coli, GI1789847, Length=230, Percent_Identity=51.304347826087, Blast_Score=237, Evalue=5e-64, Organism=Escherichia coli, GI1789493, Length=232, Percent_Identity=34.4827586206897, Blast_Score=131, Evalue=4e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR012093 - InterPro: IPR003829 - InterPro: IPR014710 [H]
Pfam domain/function: PF02678 Pirin [H]
EC number: =1.13.11.24 [H]
Molecular weight: Translated: 25561; Mature: 25430
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLRLRPSAQRGHANHGWLDSRHTFSFADYFDPAQMGFRALRVINEDWVAPQTGFDTHPH CEEECCCCCCCCCCCCCCCCCCCEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC RDMEILTYVIAGAVEHKDSTGAHGITRRGEIQAMTAGTGIRHSEMNPLADQILHLLQIWI CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH LPEAQRLTPGYSQTVFDDESKRDRLRLIASRDGRDGSLVLHQDVAIHASILSPGHTLSHQ CCCHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECEEEEEEECCCCCCHHHH LVAGRGAWVQVVAGTLVLNGQVLAAGDGAAMEDEAMLTLTSESGAEFLLFDLA HHCCCCCEEEEEEEEEEECCEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEC >Mature Secondary Structure TLRLRPSAQRGHANHGWLDSRHTFSFADYFDPAQMGFRALRVINEDWVAPQTGFDTHPH EEECCCCCCCCCCCCCCCCCCCEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC RDMEILTYVIAGAVEHKDSTGAHGITRRGEIQAMTAGTGIRHSEMNPLADQILHLLQIWI CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH LPEAQRLTPGYSQTVFDDESKRDRLRLIASRDGRDGSLVLHQDVAIHASILSPGHTLSHQ CCCHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECEEEEEEECCCCCCHHHH LVAGRGAWVQVVAGTLVLNGQVLAAGDGAAMEDEAMLTLTSESGAEFLLFDLA HHCCCCCEEEEEEEEEEECCEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]