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The map label for this gene is yciR [C]

Identifier: 83312662

GI number: 83312662

Start: 3915876

End: 3917558

Strand: Reverse

Name: yciR [C]

Synonym: amb3563

Alternate gene names: 83312662

Gene position: 3917558-3915876 (Counterclockwise)

Preceding gene: 83312664

Following gene: 83312659

Centisome position: 78.87

GC content: 65.6

Gene sequence:

>1683_bases
ATGGAAACCGAGCTTCCCATTGCCATTTCCCGCAATCCCGGAGACGGCCGGGGTGGTCCGGCGGGAGTGGTGCTGGAGTT
TCGCGCCGAGCCCGGGCTGGGTCGCCGTTTCCTGATGCTGACCTGTTCGGCCGTGGCCCTGTGGCTGGTGGCCTGCTGGC
TGGTGTCGGGCGAGTATGTGGTCTGGCGGGCCAGGGAATCACTGGCCCAAGTGGACCACGACGTCCACCTGAGCATCGAC
GACATGACCCAGGGTCTTCAGCGGACACTGGCGGTCTTCCACGGCATTCCATCGGCTCTGGGCCGCGATCGGGAGGTGGT
GGACGCCCTGCGCCGGTACGGTGATCCTCTCGAACCGCGCCCGCTGTCCCAAGACCGGCGCCGGAGCGGTCTGTCGTCCG
ACCCGCAGCTTGACCGGCTGAACCGTTCGCTTGCAGCATCGGTGGGCGACATTGCCGGGATCAGCGTCATCTGGCTGATC
AATCCCGCCGGCGATGCCGTGGCCGCCAGCAATCACGACCGCCCCGAGAGCTTCGTCGGGACCAATTATCGGGACAGGAC
CTATTTCTCCGAGGCCATGGCCGGGCGGTTCGGGCACCAGTTCGCGCTGGGGCGCAATACCAACATTCCGGGCCTGTTCT
TCTCCGCCCCGGTTCGCGACGGCAACCGCATTCTTGGCGTGATGGCCCTGAAGGTCGACATTCCCTATCTGGCGTCCTGG
GTCAACCAGGCCAACGCCTTCGTCAGCGACAATTACGGCGTGGTGATCCTGGCCCAGGACAAGGGGCTGGAGATGTCCAC
GCTGCCGGGCGCGGGCGTGGTGGGGCTGTCCCCGCAGGAGAGGATCGCCCGCTACAAGCGGTCCGAGTTCGTCGAGTTGC
CCATCGTGCCGTGGGGGGCGCCCGACCACCCCAACCTGTATCGCTGGGGGGCAGATGGTGTGCCTTACATCCGCCTTTCA
ACCATCCTGCCCGACGATGATCTCGCCCTGACCGTCTTGGCGCCGGTGGACCGCTTGGCCACCATGGACGAGGACCGGCT
GTGGCAGTTCAGCCTGGCGGGCGCCATGGGGACGCTGGTGATCATCCTGGCCGGCTTCGCCACCCATCACTGGGTCGATC
GCGAACGCAGCCGGCGCAATCGGGCCAGCCGCCAGCAGGTGGAATATCTGGCCACTCACGATGTCCTGACAGGTCTGTTC
AGCCGCATCGTTCTCGACCAGTTCATCGGACACGGCATCGCCAGGGCGAAGCGGACGGGGCGTGGGATGGCCGTGCTCTT
CATCGATTTGGATCAATTCAAGGATGTCAACGATACCCTGGGCCACGAGGTGGGCGATCTGGTGCTGAAGGACGCGGCGC
GCCGTCTGCAGCAGACGGTCCGCGAAGCCGATGTGGTCATCCGCCAGGGGGGCGACGAGTTCATCGTGCTGCTTTTCGAT
CAACCGCAGGCCAGCGACGTCCGCCAGGTGGCTGAAAAGATTCAGGCGGCTCTGGGGGTGCCCTACTCCATCACTGATCC
GCCCCAGAATCTGTCGGCCAGCATCGGTATCGCCTGTTATCCCGAGCATGGGGAGACCGCCTCGCTGCTGCTGCGCCACG
CGGATTCCGCCATGTACCAGGCCAAGGAGCGAGGCGGGCGATGCTGTCGCTTCTTCGAGGCGGGGGCTGGGACAACGGCG
TAA

Upstream 100 bases:

>100_bases
CGCGCCGTCTCGCTTTTTCATTTCCACCTCTCTCCGGAATGCGTAGATTCGTGGCCTCTCCGCAGACTATTTTCCAAGGC
GGAAGGAGGGGGGACGGGGC

Downstream 100 bases:

>100_bases
GGGATCCCGCCCTGTCGGCAGGATCCCGGCCGCCATGCGGCCGAGGGCGGTCAGCCGCCCTCCCGCCGTCCTCCGGTATG
GAGCGCCAGGGCGCGGGCCA

Product: C4-dicarboxylate transport sensor protein dctB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
METELPIAISRNPGDGRGGPAGVVLEFRAEPGLGRRFLMLTCSAVALWLVACWLVSGEYVVWRARESLAQVDHDVHLSID
DMTQGLQRTLAVFHGIPSALGRDREVVDALRRYGDPLEPRPLSQDRRRSGLSSDPQLDRLNRSLAASVGDIAGISVIWLI
NPAGDAVAASNHDRPESFVGTNYRDRTYFSEAMAGRFGHQFALGRNTNIPGLFFSAPVRDGNRILGVMALKVDIPYLASW
VNQANAFVSDNYGVVILAQDKGLEMSTLPGAGVVGLSPQERIARYKRSEFVELPIVPWGAPDHPNLYRWGADGVPYIRLS
TILPDDDLALTVLAPVDRLATMDEDRLWQFSLAGAMGTLVIILAGFATHHWVDRERSRRNRASRQQVEYLATHDVLTGLF
SRIVLDQFIGHGIARAKRTGRGMAVLFIDLDQFKDVNDTLGHEVGDLVLKDAARRLQQTVREADVVIRQGGDEFIVLLFD
QPQASDVRQVAEKIQAALGVPYSITDPPQNLSASIGIACYPEHGETASLLLRHADSAMYQAKERGGRCCRFFEAGAGTTA

Sequences:

>Translated_560_residues
METELPIAISRNPGDGRGGPAGVVLEFRAEPGLGRRFLMLTCSAVALWLVACWLVSGEYVVWRARESLAQVDHDVHLSID
DMTQGLQRTLAVFHGIPSALGRDREVVDALRRYGDPLEPRPLSQDRRRSGLSSDPQLDRLNRSLAASVGDIAGISVIWLI
NPAGDAVAASNHDRPESFVGTNYRDRTYFSEAMAGRFGHQFALGRNTNIPGLFFSAPVRDGNRILGVMALKVDIPYLASW
VNQANAFVSDNYGVVILAQDKGLEMSTLPGAGVVGLSPQERIARYKRSEFVELPIVPWGAPDHPNLYRWGADGVPYIRLS
TILPDDDLALTVLAPVDRLATMDEDRLWQFSLAGAMGTLVIILAGFATHHWVDRERSRRNRASRQQVEYLATHDVLTGLF
SRIVLDQFIGHGIARAKRTGRGMAVLFIDLDQFKDVNDTLGHEVGDLVLKDAARRLQQTVREADVVIRQGGDEFIVLLFD
QPQASDVRQVAEKIQAALGVPYSITDPPQNLSASIGIACYPEHGETASLLLRHADSAMYQAKERGGRCCRFFEAGAGTTA
>Mature_560_residues
METELPIAISRNPGDGRGGPAGVVLEFRAEPGLGRRFLMLTCSAVALWLVACWLVSGEYVVWRARESLAQVDHDVHLSID
DMTQGLQRTLAVFHGIPSALGRDREVVDALRRYGDPLEPRPLSQDRRRSGLSSDPQLDRLNRSLAASVGDIAGISVIWLI
NPAGDAVAASNHDRPESFVGTNYRDRTYFSEAMAGRFGHQFALGRNTNIPGLFFSAPVRDGNRILGVMALKVDIPYLASW
VNQANAFVSDNYGVVILAQDKGLEMSTLPGAGVVGLSPQERIARYKRSEFVELPIVPWGAPDHPNLYRWGADGVPYIRLS
TILPDDDLALTVLAPVDRLATMDEDRLWQFSLAGAMGTLVIILAGFATHHWVDRERSRRNRASRQQVEYLATHDVLTGLF
SRIVLDQFIGHGIARAKRTGRGMAVLFIDLDQFKDVNDTLGHEVGDLVLKDAARRLQQTVREADVVIRQGGDEFIVLLFD
QPQASDVRQVAEKIQAALGVPYSITDPPQNLSASIGIACYPEHGETASLLLRHADSAMYQAKERGGRCCRFFEAGAGTTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=38.3720930232558, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=35.9550561797753, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=30.2857142857143, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1788956, Length=176, Percent_Identity=35.7954545454545, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081881, Length=161, Percent_Identity=35.4037267080745, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=34.1176470588235, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787262, Length=270, Percent_Identity=28.1481481481481, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=32.2981366459627, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081974, Length=154, Percent_Identity=31.1688311688312, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=29.8136645962733, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=155, Percent_Identity=33.5483870967742, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=34.5454545454545, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=31.547619047619, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI87081921, Length=170, Percent_Identity=28.2352941176471, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 61497; Mature: 61497

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METELPIAISRNPGDGRGGPAGVVLEFRAEPGLGRRFLMLTCSAVALWLVACWLVSGEYV
CCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
VWRARESLAQVDHDVHLSIDDMTQGLQRTLAVFHGIPSALGRDREVVDALRRYGDPLEPR
EEECHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCCCCC
PLSQDRRRSGLSSDPQLDRLNRSLAASVGDIAGISVIWLINPAGDAVAASNHDRPESFVG
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEECCCCCCCCHHCC
TNYRDRTYFSEAMAGRFGHQFALGRNTNIPGLFFSAPVRDGNRILGVMALKVDIPYLASW
CCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEECCCCCCCEEEEEEEEEECHHHHHHH
VNQANAFVSDNYGVVILAQDKGLEMSTLPGAGVVGLSPQERIARYKRSEFVELPIVPWGA
HHHHCCEEECCCCEEEEECCCCCEEECCCCCCEECCCHHHHHHHHHHCCCEEECEECCCC
PDHPNLYRWGADGVPYIRLSTILPDDDLALTVLAPVDRLATMDEDRLWQFSLAGAMGTLV
CCCCCCEEECCCCCCEEEEEEECCCCCCEEEEECCHHHHHCCCCHHEEEEEHHHHHHHHH
IILAGFATHHWVDRERSRRNRASRQQVEYLATHDVLTGLFSRIVLDQFIGHGIARAKRTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RGMAVLFIDLDQFKDVNDTLGHEVGDLVLKDAARRLQQTVREADVVIRQGGDEFIVLLFD
CCEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEC
QPQASDVRQVAEKIQAALGVPYSITDPPQNLSASIGIACYPEHGETASLLLRHADSAMYQ
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
AKERGGRCCRFFEAGAGTTA
HHHCCCCEEEEEECCCCCCC
>Mature Secondary Structure
METELPIAISRNPGDGRGGPAGVVLEFRAEPGLGRRFLMLTCSAVALWLVACWLVSGEYV
CCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
VWRARESLAQVDHDVHLSIDDMTQGLQRTLAVFHGIPSALGRDREVVDALRRYGDPLEPR
EEECHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCCCCC
PLSQDRRRSGLSSDPQLDRLNRSLAASVGDIAGISVIWLINPAGDAVAASNHDRPESFVG
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEECCCCCCCCHHCC
TNYRDRTYFSEAMAGRFGHQFALGRNTNIPGLFFSAPVRDGNRILGVMALKVDIPYLASW
CCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEECCCCCCCEEEEEEEEEECHHHHHHH
VNQANAFVSDNYGVVILAQDKGLEMSTLPGAGVVGLSPQERIARYKRSEFVELPIVPWGA
HHHHCCEEECCCCEEEEECCCCCEEECCCCCCEECCCHHHHHHHHHHCCCEEECEECCCC
PDHPNLYRWGADGVPYIRLSTILPDDDLALTVLAPVDRLATMDEDRLWQFSLAGAMGTLV
CCCCCCEEECCCCCCEEEEEEECCCCCCEEEEECCHHHHHCCCCHHEEEEEHHHHHHHHH
IILAGFATHHWVDRERSRRNRASRQQVEYLATHDVLTGLFSRIVLDQFIGHGIARAKRTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RGMAVLFIDLDQFKDVNDTLGHEVGDLVLKDAARRLQQTVREADVVIRQGGDEFIVLLFD
CCEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEC
QPQASDVRQVAEKIQAALGVPYSITDPPQNLSASIGIACYPEHGETASLLLRHADSAMYQ
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
AKERGGRCCRFFEAGAGTTA
HHHCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]