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The map label for this gene is rpfG [H]

Identifier: 83312539

GI number: 83312539

Start: 3772950

End: 3774548

Strand: Reverse

Name: rpfG [H]

Synonym: amb3440

Alternate gene names: 83312539

Gene position: 3774548-3772950 (Counterclockwise)

Preceding gene: 83312540

Following gene: 83312535

Centisome position: 75.99

GC content: 69.17

Gene sequence:

>1599_bases
GTGCAGGTCATCGACGCTGTCAAACTGCAGCGCAATATCATCGTCTACGCAGTGCTGGCCATGGCCGTCGTTGGATTGGG
CGTCGCCCTGGCCGCCATCATTCCCTTGCACCGGCAGATGGTCCGTTCGGCGGACCAGGCCCTGGAGCACGGCCTGGACC
TCCAGGTCGCCGCCCTGCGCGAGACGGTGGACCGCATGGGCGACATGGCCCGCCAGGTGACCAGCCGCAGCGTCATCCGC
GACGCCTTGAGCAGCTACAACCAGGGCGCCATGAGCCTGGACAAGCTGCAGGCTTTCACTGCCGACAAACTCGGCGATTC
CATGAAGCTGTCGCGCGACATGCTGGGCATCCTGCGCGTCGGCCGGGATTATCGTCCGCTGGTGTCGGTGGGGGCGTCCG
TTCCTCCCGCCCTGTGGAGCCCCGAGGCGGGCGAGCCCCCGGCCCTGGGGGCACCCACCCTGATCGACGGCCGCTGGGTC
CTGCTGGTCTCGGCGCCGATCCTGGGGCGCGACGGCACCCGCGAAGGTCACGACCTGCTGCTGTTCGACGCCCAGGGCCT
GCGTGCCATCGTCGCCGACGTGGAAACCCTGGGGCGGACCGGAGAGATCATTCTCGGACGCCTGGCGGCCTCGGGCGCCC
AGGTGTTCTTTCCCCGCCGCGACGGGAGCGCGGGGGGGGATGACGAGGTGGCCGAGGCGTTCTCGCGGGCCGCGATCGAT
CCCGAGCCCCTGTATCTGACCCGGCCCGGCGCCGTGCCCGACGTGGTCCTGTCCCAGCGCCTGCCCGGCAGCGACTGGAT
CGTGATGGTGCGCCAGGATCTGGCCGAACTGCACAGCAATATCGACCAGCTGGTCCTGTCGGTGGCGGCCGGCGCCCTGG
TGCTGGTGGGATTCGGCATGGTCGGCTTCGTGCTGATCCTGCGCCCGCTGACCGGGCGCATGCTGGTGCATACCGGCGAC
CTGAAGCGCCAGATCAAGGATGGCGAGCGGGCCCAGGCGGCGCTGGAGCGTGCCCTGGAAGGCACCATCGAGGCGGTGGC
CTCCACCATCGAGGTGCGCGATCCCTATACCGCCGGCCATCAGCGGCGGGTCGCCGAGATCGCGGTGGCCATTGGCCGGC
AACTGGGATTGCCGGCCGAGACGCTGAAGGGCCTGCGGGTGGCCGGCACCATCCACGATATCGGCAAGATCGGCATTCCG
GCCGAGATGCTGACCCGCCCCGGCCGTCTGTCGGCCCTGGAATTCGACATCATCCGCAACCATTCCGCCGATGGCTGCGA
GATTCTCAACGGCGTGGACTTTCCCTGGCCCATCGCCGACATGGTGCGCCATCACCACGAACGCATGGACGGAAGCGGCT
ATCCCGACGGGCTGAAGGGGGACGAGATCCTTTTCGAGGCCCGCATTCTGGCCGTGGCCGACGTGGTCGAAGCCATCGCC
TCGGACCGTCCGTACCGTGCCGCCCTGGGCCTGGATGCGGCCATGCGCGAGATCATCGCCCACAGCGGCACCCTGTTCGA
CGCGGCGGTGGTGGATGCCTGCCGCGTTCTGGCGGCCGAGGGACGGCTGCCGCTGGGGGATCGGCCCAGCCTTCAGTAA

Upstream 100 bases:

>100_bases
CCGTCCGGCTTCATGGCGGCGATCGGGTCTTTCCTGTAGTCATTGCGTTTTCCGGCCGTGATTTGATAGAAGTCAAATCA
CGAGGTGGAGGTCGGTTCGA

Downstream 100 bases:

>100_bases
TCGGCCAGGGGGTGGGGCGGCGCCTCGTCGCCGTGATCGAGGAATTGCGCCTTGATGCGCAGCACCTCGCCGAGATCGGA
CAGGAATGCATCGACGCAGG

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MQVIDAVKLQRNIIVYAVLAMAVVGLGVALAAIIPLHRQMVRSADQALEHGLDLQVAALRETVDRMGDMARQVTSRSVIR
DALSSYNQGAMSLDKLQAFTADKLGDSMKLSRDMLGILRVGRDYRPLVSVGASVPPALWSPEAGEPPALGAPTLIDGRWV
LLVSAPILGRDGTREGHDLLLFDAQGLRAIVADVETLGRTGEIILGRLAASGAQVFFPRRDGSAGGDDEVAEAFSRAAID
PEPLYLTRPGAVPDVVLSQRLPGSDWIVMVRQDLAELHSNIDQLVLSVAAGALVLVGFGMVGFVLILRPLTGRMLVHTGD
LKRQIKDGERAQAALERALEGTIEAVASTIEVRDPYTAGHQRRVAEIAVAIGRQLGLPAETLKGLRVAGTIHDIGKIGIP
AEMLTRPGRLSALEFDIIRNHSADGCEILNGVDFPWPIADMVRHHHERMDGSGYPDGLKGDEILFEARILAVADVVEAIA
SDRPYRAALGLDAAMREIIAHSGTLFDAAVVDACRVLAAEGRLPLGDRPSLQ

Sequences:

>Translated_532_residues
MQVIDAVKLQRNIIVYAVLAMAVVGLGVALAAIIPLHRQMVRSADQALEHGLDLQVAALRETVDRMGDMARQVTSRSVIR
DALSSYNQGAMSLDKLQAFTADKLGDSMKLSRDMLGILRVGRDYRPLVSVGASVPPALWSPEAGEPPALGAPTLIDGRWV
LLVSAPILGRDGTREGHDLLLFDAQGLRAIVADVETLGRTGEIILGRLAASGAQVFFPRRDGSAGGDDEVAEAFSRAAID
PEPLYLTRPGAVPDVVLSQRLPGSDWIVMVRQDLAELHSNIDQLVLSVAAGALVLVGFGMVGFVLILRPLTGRMLVHTGD
LKRQIKDGERAQAALERALEGTIEAVASTIEVRDPYTAGHQRRVAEIAVAIGRQLGLPAETLKGLRVAGTIHDIGKIGIP
AEMLTRPGRLSALEFDIIRNHSADGCEILNGVDFPWPIADMVRHHHERMDGSGYPDGLKGDEILFEARILAVADVVEAIA
SDRPYRAALGLDAAMREIIAHSGTLFDAAVVDACRVLAAEGRLPLGDRPSLQ
>Mature_532_residues
MQVIDAVKLQRNIIVYAVLAMAVVGLGVALAAIIPLHRQMVRSADQALEHGLDLQVAALRETVDRMGDMARQVTSRSVIR
DALSSYNQGAMSLDKLQAFTADKLGDSMKLSRDMLGILRVGRDYRPLVSVGASVPPALWSPEAGEPPALGAPTLIDGRWV
LLVSAPILGRDGTREGHDLLLFDAQGLRAIVADVETLGRTGEIILGRLAASGAQVFFPRRDGSAGGDDEVAEAFSRAAID
PEPLYLTRPGAVPDVVLSQRLPGSDWIVMVRQDLAELHSNIDQLVLSVAAGALVLVGFGMVGFVLILRPLTGRMLVHTGD
LKRQIKDGERAQAALERALEGTIEAVASTIEVRDPYTAGHQRRVAEIAVAIGRQLGLPAETLKGLRVAGTIHDIGKIGIP
AEMLTRPGRLSALEFDIIRNHSADGCEILNGVDFPWPIADMVRHHHERMDGSGYPDGLKGDEILFEARILAVADVVEAIA
SDRPYRAALGLDAAMREIIAHSGTLFDAAVVDACRVLAAEGRLPLGDRPSLQ

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 56949; Mature: 56949

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVIDAVKLQRNIIVYAVLAMAVVGLGVALAAIIPLHRQMVRSADQALEHGLDLQVAALR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ETVDRMGDMARQVTSRSVIRDALSSYNQGAMSLDKLQAFTADKLGDSMKLSRDMLGILRV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GRDYRPLVSVGASVPPALWSPEAGEPPALGAPTLIDGRWVLLVSAPILGRDGTREGHDLL
CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCEEE
LFDAQGLRAIVADVETLGRTGEIILGRLAASGAQVFFPRRDGSAGGDDEVAEAFSRAAID
EECCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC
PEPLYLTRPGAVPDVVLSQRLPGSDWIVMVRQDLAELHSNIDQLVLSVAAGALVLVGFGM
CCCEEEECCCCCHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGFVLILRPLTGRMLVHTGDLKRQIKDGERAQAALERALEGTIEAVASTIEVRDPYTAGH
HHHHHHHHHCCCCEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
QRRVAEIAVAIGRQLGLPAETLKGLRVAGTIHDIGKIGIPAEMLTRPGRLSALEFDIIRN
HHHHHHHHHHHHHHCCCCHHHHCCCEEEEHHHHHHCCCCCHHHHCCCCCCCCEEEHHHHC
HSADGCEILNGVDFPWPIADMVRHHHERMDGSGYPDGLKGDEILFEARILAVADVVEAIA
CCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
SDRPYRAALGLDAAMREIIAHSGTLFDAAVVDACRVLAAEGRLPLGDRPSLQ
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQVIDAVKLQRNIIVYAVLAMAVVGLGVALAAIIPLHRQMVRSADQALEHGLDLQVAALR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ETVDRMGDMARQVTSRSVIRDALSSYNQGAMSLDKLQAFTADKLGDSMKLSRDMLGILRV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GRDYRPLVSVGASVPPALWSPEAGEPPALGAPTLIDGRWVLLVSAPILGRDGTREGHDLL
CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCEEE
LFDAQGLRAIVADVETLGRTGEIILGRLAASGAQVFFPRRDGSAGGDDEVAEAFSRAAID
EECCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC
PEPLYLTRPGAVPDVVLSQRLPGSDWIVMVRQDLAELHSNIDQLVLSVAAGALVLVGFGM
CCCEEEECCCCCHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGFVLILRPLTGRMLVHTGDLKRQIKDGERAQAALERALEGTIEAVASTIEVRDPYTAGH
HHHHHHHHHCCCCEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
QRRVAEIAVAIGRQLGLPAETLKGLRVAGTIHDIGKIGIPAEMLTRPGRLSALEFDIIRN
HHHHHHHHHHHHHHCCCCHHHHCCCEEEEHHHHHHCCCCCHHHHCCCCCCCCEEEHHHHC
HSADGCEILNGVDFPWPIADMVRHHHERMDGSGYPDGLKGDEILFEARILAVADVVEAIA
CCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
SDRPYRAALGLDAAMREIIAHSGTLFDAAVVDACRVLAAEGRLPLGDRPSLQ
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]