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The map label for this gene is yciR [C]

Identifier: 83312504

GI number: 83312504

Start: 3696925

End: 3698199

Strand: Reverse

Name: yciR [C]

Synonym: amb3405

Alternate gene names: 83312504

Gene position: 3698199-3696925 (Counterclockwise)

Preceding gene: 83312509

Following gene: 83312503

Centisome position: 74.45

GC content: 64.39

Gene sequence:

>1275_bases
ATGACCGAGCTCGATCCCATCGGTTTGGCCGGCGTCCTTGAAGACAGCCCCATCGGCGTATCCATCTCGCGGCGGCGCGA
CGGCGTCATCGTTTTCGCCAACCATACGTTCTGCGACCTGATCGGCGTGCCGCGGGTCACGGTTCTGGGATCCAAGGCCC
GCGACTATTACGTGGACGATCATCAGCGGGCCACGGTGATCAAGCACATGAAGCGCCACGGCAGCGTCGACCATGCGGAG
GTGCAGTTCCGCCGCTCGGACGGGGCGCCGTTCTGGACGCTGCTGACCATCCGCGAATCTCTGTTCGGGACCGAGCCGGT
CAATTTGGCCTGGGTCTACGACATCACCGAGCGCAAGACCTCGGAGGAGCGGCTGCAACTGGCGGCCAAGGTGGTGGAAA
CCGCCAACGAAGGCATCATGATCACAGGCCCCGACGGCACCATCGAGGCGGTCAACACGGCCTTCACCCGCATCACTGGC
TTTTCCCTGGACGAGGCCATCGGCAAGAAGCCCAACATCCTGAAATCGGGCCGGCACGAAAACGACTTCTATCGCGATAT
GTGGCGCGCCATCCTCGAGACCGGCCAGTGGCAGGGCGAGGTCTGGAACCGGCGGCGGACCGGCGAAGTGTTCATCGAGT
GGCTGTCCATCGCCACGGTGCGCGATGCCTTCGGCGAGGTGTCCCACATGCTGGGCATCTTCAGCGACATCACGGCGCGC
AAGGAGGATGAGGAGCAGGTGTGGCGCCAGGCCAATTTCGACGCGCTGACCGGTCTGCCCAACCGCTCGCTGTTCCTCGA
CCGCCTGGGCCAGGCGGTCAAGGCCGCCAAGCGCGACAAGACCCGCTTCGCCCTGCTGTTCATCGATCTCGACGGCTTCA
AGAAGGTCAACGACACCTTCGGCCACGCGGTGGGCGACCTGCTGCTGCAGGAGGCGGCGGCGCGGCTTTTGCTCTCGGTG
CGCTCGTCGGACACGGTGGCGCGGCTGTCTGGCGACGAATTCACCGTCATCCTCCACGACGTGGAGGGCAAGGACGAGAT
CGGCAACGTGGCGGCCAAGGTCGTCTCGCGGCTGGCCGAACCCTTTGAACTGGACGGGCATGACGCCAATGTCCAGGCCA
GCGTGGGCATCGCCATCTTCCCCGACGACGCCGACGATGCCGCCATGCTGATCCGTCTGGCCGACCGGGCCATGTACACG
GTCAAGGGGGCGGGCAAGAATAATTTCGGCTTCCACGAGATGCCGGAACGTCTTGTCTATCCGCTTTATGCGTGA

Upstream 100 bases:

>100_bases
GGGTTCGGGCAGAGGTTTCCCAATGGGCGAAGGCCCGTGGCTTCGGGGGGAGCCAAACAAGGGGGGAGAACATGATCCAT
CGTGATTCCCGGTTGTGGCC

Downstream 100 bases:

>100_bases
TGTCTTAGTCCCCGGCCCGTAATCCAAGGGACGGAGACGACCATGTTCACCCTGACGCCGCTCGAGATGGAGGCGCTGCG
CCTGTCTCTGCTGGTGTCGT

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MTELDPIGLAGVLEDSPIGVSISRRRDGVIVFANHTFCDLIGVPRVTVLGSKARDYYVDDHQRATVIKHMKRHGSVDHAE
VQFRRSDGAPFWTLLTIRESLFGTEPVNLAWVYDITERKTSEERLQLAAKVVETANEGIMITGPDGTIEAVNTAFTRITG
FSLDEAIGKKPNILKSGRHENDFYRDMWRAILETGQWQGEVWNRRRTGEVFIEWLSIATVRDAFGEVSHMLGIFSDITAR
KEDEEQVWRQANFDALTGLPNRSLFLDRLGQAVKAAKRDKTRFALLFIDLDGFKKVNDTFGHAVGDLLLQEAAARLLLSV
RSSDTVARLSGDEFTVILHDVEGKDEIGNVAAKVVSRLAEPFELDGHDANVQASVGIAIFPDDADDAAMLIRLADRAMYT
VKGAGKNNFGFHEMPERLVYPLYA

Sequences:

>Translated_424_residues
MTELDPIGLAGVLEDSPIGVSISRRRDGVIVFANHTFCDLIGVPRVTVLGSKARDYYVDDHQRATVIKHMKRHGSVDHAE
VQFRRSDGAPFWTLLTIRESLFGTEPVNLAWVYDITERKTSEERLQLAAKVVETANEGIMITGPDGTIEAVNTAFTRITG
FSLDEAIGKKPNILKSGRHENDFYRDMWRAILETGQWQGEVWNRRRTGEVFIEWLSIATVRDAFGEVSHMLGIFSDITAR
KEDEEQVWRQANFDALTGLPNRSLFLDRLGQAVKAAKRDKTRFALLFIDLDGFKKVNDTFGHAVGDLLLQEAAARLLLSV
RSSDTVARLSGDEFTVILHDVEGKDEIGNVAAKVVSRLAEPFELDGHDANVQASVGIAIFPDDADDAAMLIRLADRAMYT
VKGAGKNNFGFHEMPERLVYPLYA
>Mature_423_residues
TELDPIGLAGVLEDSPIGVSISRRRDGVIVFANHTFCDLIGVPRVTVLGSKARDYYVDDHQRATVIKHMKRHGSVDHAEV
QFRRSDGAPFWTLLTIRESLFGTEPVNLAWVYDITERKTSEERLQLAAKVVETANEGIMITGPDGTIEAVNTAFTRITGF
SLDEAIGKKPNILKSGRHENDFYRDMWRAILETGQWQGEVWNRRRTGEVFIEWLSIATVRDAFGEVSHMLGIFSDITARK
EDEEQVWRQANFDALTGLPNRSLFLDRLGQAVKAAKRDKTRFALLFIDLDGFKKVNDTFGHAVGDLLLQEAAARLLLSVR
SSDTVARLSGDEFTVILHDVEGKDEIGNVAAKVVSRLAEPFELDGHDANVQASVGIAIFPDDADDAAMLIRLADRAMYTV
KGAGKNNFGFHEMPERLVYPLYA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=302, Percent_Identity=29.8013245033113, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1788381, Length=318, Percent_Identity=30.188679245283, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=37.1428571428571, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=36, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787262, Length=225, Percent_Identity=31.1111111111111, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=34.7826086956522, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=33.1325301204819, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=34.4155844155844, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=197, Percent_Identity=28.9340101522843, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081881, Length=111, Percent_Identity=41.4414414414414, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081974, Length=133, Percent_Identity=32.3308270676692, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787802, Length=206, Percent_Identity=29.126213592233, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 47306; Mature: 47175

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELDPIGLAGVLEDSPIGVSISRRRDGVIVFANHTFCDLIGVPRVTVLGSKARDYYVDD
CCCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCEEHHCCCCEEEEECCCCCCCCCCC
HQRATVIKHMKRHGSVDHAEVQFRRSDGAPFWTLLTIRESLFGTEPVNLAWVYDITERKT
CHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEHHHHHHHHHCCCCCCEEEEEEECHHCCC
SEERLQLAAKVVETANEGIMITGPDGTIEAVNTAFTRITGFSLDEAIGKKPNILKSGRHE
HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCC
NDFYRDMWRAILETGQWQGEVWNRRRTGEVFIEWLSIATVRDAFGEVSHMLGIFSDITAR
CHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KEDEEQVWRQANFDALTGLPNRSLFLDRLGQAVKAAKRDKTRFALLFIDLDGFKKVNDTF
CCCHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHH
GHAVGDLLLQEAAARLLLSVRSSDTVARLSGDEFTVILHDVEGKDEIGNVAAKVVSRLAE
HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHCC
PFELDGHDANVQASVGIAIFPDDADDAAMLIRLADRAMYTVKGAGKNNFGFHEMPERLVY
CCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHEEEEECCCCCCCCHHHCHHHHCC
PLYA
CCCC
>Mature Secondary Structure 
TELDPIGLAGVLEDSPIGVSISRRRDGVIVFANHTFCDLIGVPRVTVLGSKARDYYVDD
CCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCEEHHCCCCEEEEECCCCCCCCCCC
HQRATVIKHMKRHGSVDHAEVQFRRSDGAPFWTLLTIRESLFGTEPVNLAWVYDITERKT
CHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEHHHHHHHHHCCCCCCEEEEEEECHHCCC
SEERLQLAAKVVETANEGIMITGPDGTIEAVNTAFTRITGFSLDEAIGKKPNILKSGRHE
HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCC
NDFYRDMWRAILETGQWQGEVWNRRRTGEVFIEWLSIATVRDAFGEVSHMLGIFSDITAR
CHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KEDEEQVWRQANFDALTGLPNRSLFLDRLGQAVKAAKRDKTRFALLFIDLDGFKKVNDTF
CCCHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHH
GHAVGDLLLQEAAARLLLSVRSSDTVARLSGDEFTVILHDVEGKDEIGNVAAKVVSRLAE
HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHCC
PFELDGHDANVQASVGIAIFPDDADDAAMLIRLADRAMYTVKGAGKNNFGFHEMPERLVY
CCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHEEEEECCCCCCCCHHHCHHHHCC
PLYA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]