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The map label for this gene is yddU [C]

Identifier: 83312411

GI number: 83312411

Start: 3594237

End: 3595421

Strand: Reverse

Name: yddU [C]

Synonym: amb3312

Alternate gene names: 83312411

Gene position: 3595421-3594237 (Counterclockwise)

Preceding gene: 83312412

Following gene: 83312410

Centisome position: 72.38

GC content: 57.97

Gene sequence:

>1185_bases
ATGACTGATTTGGCAAAAGCAGATCAGCCGCGCGTGCTGATTCTTGATGACGAGCGTGATATGTGCGAATTCGTCGCCGA
TGTCGGGGACGATCAGGGTTTCAATGCGCAGTGGTGCGACAATTTCGAAGATTTCGCCTGCCGCTATTCCATTGACCTCC
GGGGGATTTTTCTTGACCTCGCCATGCCGGGGGTGGATGGCATCGAAATCATTCGCTTCCTGGGCGACAATAATTCCAAG
GCCCATCTGGTTTTGATGAGCGGCCACGATATCCATCTGCTGGAGGCCGCGAGACGATTGGCGGAAAGCCGCGGCCTGAA
GGTGGCCGGAGTGCTGCACAAGCCGTTCGAATTATCGGCTCTGGTGGGGCTGTACGATCAATTGGCTGCCATCACCGCCC
CCCAGTGCCCCACTACCTCGGCAAGGCCGGGCAGCCAGTATGTTCCGACTGCGTCCGATCTCGATGCCGCCTTGGCAGCG
GGTCACATCATTCCCTTCTATCAGCCAAAGCTCAGCGTTTCCACCCGCGCCATCACCGGCGTCGAGGTCCTGGCTCGCTG
GAGACATCCAGACCACGGCCTGGTCGGCCCGGATTACTTCATCCCCTTGGCCGAGAAGGAAGGGCTGATCGAGCGCCTGA
CCGATCAGATCATCGATCAATCCCTGGTTCAGGGACGTATCTGGCTGGATCAGGGGCGGCCCTTGAAACTGGCGCTCAAT
CTCTCGGCCCTCTCCCTCCGGCACCTCGATCTACCGGAAGACCTGCTTCGTCGGGTCGAAGGTCGGGGGCTTTCGCCGGA
ACAGATTGTCCTTGAAATTACCGAATCAGCCCTGGCTTCCGATTTTTCCGCATCATTGGATATCCTGACCCGGTTGCGGA
TGCGGCGATTCGCCCTGTCTATCGACGATTTTGGCACCGGCTATTCGTCATTGAAGCAACTTCAACACGGACCGTTTACC
GAATTGAAGATCGATCAGTCCTTCATCGCCAAGGCGCTGGAAGAGGAAGGATCGCTGGCCATCGTCGAAAGTTCCGTCCA
ATTGGGACGCCGCATGGGGTTGAAGGTAGTGGCCGAAGGGATCGAAACCGAGCAGCAGATGGACCTGATCAGGCATCTTG
GTTGCGACGAGGCCCAGGGCTACCTCCTTGGTCGGCCTGTCGCCGCCAATGATTTTCCCCGTTAA

Upstream 100 bases:

>100_bases
ACCAGAACGACGGCGGCTTTTCTGTGATATCCAAGCCCTACAGCAAGGCGGATTTGGCAAGGATGGTAAGAACCATTCTT
GATGGATCGGATGGTTCATG

Downstream 100 bases:

>100_bases
CACCCATTCAAACAAAGGTCCAACTATGGAACAGACGGCACCGGAATGGTTTGACGGCAAGAAACTCGGGGTGGACTTCA
TCGACCAGGATCATGCCCAG

Product: PvrR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MTDLAKADQPRVLILDDERDMCEFVADVGDDQGFNAQWCDNFEDFACRYSIDLRGIFLDLAMPGVDGIEIIRFLGDNNSK
AHLVLMSGHDIHLLEAARRLAESRGLKVAGVLHKPFELSALVGLYDQLAAITAPQCPTTSARPGSQYVPTASDLDAALAA
GHIIPFYQPKLSVSTRAITGVEVLARWRHPDHGLVGPDYFIPLAEKEGLIERLTDQIIDQSLVQGRIWLDQGRPLKLALN
LSALSLRHLDLPEDLLRRVEGRGLSPEQIVLEITESALASDFSASLDILTRLRMRRFALSIDDFGTGYSSLKQLQHGPFT
ELKIDQSFIAKALEEEGSLAIVESSVQLGRRMGLKVVAEGIETEQQMDLIRHLGCDEAQGYLLGRPVAANDFPR

Sequences:

>Translated_394_residues
MTDLAKADQPRVLILDDERDMCEFVADVGDDQGFNAQWCDNFEDFACRYSIDLRGIFLDLAMPGVDGIEIIRFLGDNNSK
AHLVLMSGHDIHLLEAARRLAESRGLKVAGVLHKPFELSALVGLYDQLAAITAPQCPTTSARPGSQYVPTASDLDAALAA
GHIIPFYQPKLSVSTRAITGVEVLARWRHPDHGLVGPDYFIPLAEKEGLIERLTDQIIDQSLVQGRIWLDQGRPLKLALN
LSALSLRHLDLPEDLLRRVEGRGLSPEQIVLEITESALASDFSASLDILTRLRMRRFALSIDDFGTGYSSLKQLQHGPFT
ELKIDQSFIAKALEEEGSLAIVESSVQLGRRMGLKVVAEGIETEQQMDLIRHLGCDEAQGYLLGRPVAANDFPR
>Mature_393_residues
TDLAKADQPRVLILDDERDMCEFVADVGDDQGFNAQWCDNFEDFACRYSIDLRGIFLDLAMPGVDGIEIIRFLGDNNSKA
HLVLMSGHDIHLLEAARRLAESRGLKVAGVLHKPFELSALVGLYDQLAAITAPQCPTTSARPGSQYVPTASDLDAALAAG
HIIPFYQPKLSVSTRAITGVEVLARWRHPDHGLVGPDYFIPLAEKEGLIERLTDQIIDQSLVQGRIWLDQGRPLKLALNL
SALSLRHLDLPEDLLRRVEGRGLSPEQIVLEITESALASDFSASLDILTRLRMRRFALSIDDFGTGYSSLKQLQHGPFTE
LKIDQSFIAKALEEEGSLAIVESSVQLGRRMGLKVVAEGIETEQQMDLIRHLGCDEAQGYLLGRPVAANDFPR

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=241, Percent_Identity=37.7593360995851, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1786507, Length=255, Percent_Identity=35.2941176470588, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=32.6693227091633, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=36.9294605809129, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=33.0578512396694, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787541, Length=249, Percent_Identity=31.3253012048193, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI226510982, Length=244, Percent_Identity=32.7868852459016, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=32.1138211382114, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788502, Length=230, Percent_Identity=32.1739130434783, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787055, Length=256, Percent_Identity=30.859375, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87082096, Length=210, Percent_Identity=34.2857142857143, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788849, Length=277, Percent_Identity=29.2418772563177, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 43489; Mature: 43358

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLAKADQPRVLILDDERDMCEFVADVGDDQGFNAQWCDNFEDFACRYSIDLRGIFLDL
CCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCHHCCCCHHCEEEEEEEEEEEEEEE
AMPGVDGIEIIRFLGDNNSKAHLVLMSGHDIHLLEAARRLAESRGLKVAGVLHKPFELSA
ECCCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHH
LVGLYDQLAAITAPQCPTTSARPGSQYVPTASDLDAALAAGHIIPFYQPKLSVSTRAITG
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
VEVLARWRHPDHGLVGPDYFIPLAEKEGLIERLTDQIIDQSLVQGRIWLDQGRPLKLALN
HHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEE
LSALSLRHLDLPEDLLRRVEGRGLSPEQIVLEITESALASDFSASLDILTRLRMRRFALS
CHHHEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IDDFGTGYSSLKQLQHGPFTELKIDQSFIAKALEEEGSLAIVESSVQLGRRMGLKVVAEG
HHHCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCEEEEHHHHHHHHHHCHHHHHHH
IETEQQMDLIRHLGCDEAQGYLLGRPVAANDFPR
CCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
TDLAKADQPRVLILDDERDMCEFVADVGDDQGFNAQWCDNFEDFACRYSIDLRGIFLDL
CCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCHHCCCCHHCEEEEEEEEEEEEEEE
AMPGVDGIEIIRFLGDNNSKAHLVLMSGHDIHLLEAARRLAESRGLKVAGVLHKPFELSA
ECCCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHH
LVGLYDQLAAITAPQCPTTSARPGSQYVPTASDLDAALAAGHIIPFYQPKLSVSTRAITG
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
VEVLARWRHPDHGLVGPDYFIPLAEKEGLIERLTDQIIDQSLVQGRIWLDQGRPLKLALN
HHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEE
LSALSLRHLDLPEDLLRRVEGRGLSPEQIVLEITESALASDFSASLDILTRLRMRRFALS
CHHHEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IDDFGTGYSSLKQLQHGPFTELKIDQSFIAKALEEEGSLAIVESSVQLGRRMGLKVVAEG
HHHCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCEEEEHHHHHHHHHHCHHHHHHH
IETEQQMDLIRHLGCDEAQGYLLGRPVAANDFPR
CCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]