Click here to switch to the map view.

The map label for this gene is atoS [C]

Identifier: 83312412

GI number: 83312412

Start: 3595421

End: 3597769

Strand: Reverse

Name: atoS [C]

Synonym: amb3313

Alternate gene names: 83312412

Gene position: 3597769-3595421 (Counterclockwise)

Preceding gene: 83312413

Following gene: 83312411

Centisome position: 72.43

GC content: 53.68

Gene sequence:

>2349_bases
GTGAAATCAGAGCGGCCTAGGGAGGCTCTGCTCTTTTTTGGCGTGAAAATCATGCCAGACTATTCTGGCCTGCTCGGGAT
GAGGCATTTCAATGAAAATCCACACACACATAGATCGCTCAACAGCAACTATCATAGAATTATAGCAATGCAAGGTGCGC
GTATATCAGCAAACAAATTAATTGCAAGCCTGACAAAAAGGCAGGCAATCGTCCTCGTCTCTCTATTTATTCTGGCATCA
TCTGGGTTTGGTGCGTTAGAATTTGCTGTTTCATTCTTATCTGATGACGGTGCCATTATTAATATGGCTGGGAGGCAGAG
AATGCTGTCTCAGCGCGTTGTCAGCCTCGGATACCAAATTATCACATCCCCATCCGACGAGGCGAAACAGTCAGTCAGAA
GCAATATGGAGAATGCAGTCGCCAGTATGGAGGCTGAGCATCAAAGGCTTATTGAAATATCTGTTGGTCGCGGGATGTCG
AACGAGCTGAATGCACTCTATTTCGGCCGAGCGCCGACACTGGATAAAAGCATCTCGTATTTTATAAAGAGGGCCCGCTA
TTTCATGGATCTGGAACTAAGTGGCGATGATCGGCGTCTCCCGCTGATTGTCCTGTATGATATTGCCATGATGTCACGCG
TTGAGCTTCTTCAAGGATTGGAGAGCGTGGTGTCTCGCTACCAATTCGAGAGCCAGGAGCGGGCTAACCGGCTTCTTTAC
AGCGCCTTCATCGGCCTGCTGATATTTACATTTGTTCTGGCATTCTCATGGGCAGGCGTGTTCCGCCCGCTGGCGCGAAA
GCTGCGGGAAGAACTCGATGCCCATCAGGTCAGCGAGGAGGTCAAAAGCTCGATTCTGGATGCAGCCCTGGATGCCATTG
TAACCATTGACGGTAATGGAGCGATTATCGAATTCAATCCAGCCGCCGAGCGCATTTTCGGACATCTTGAACAAGATGTC
GTTGGCAAGGAAATCGCCGACCTGATCATCCCGGAGCAGCACCGTGCGGCTCATCGGGCTGGAATAGCCCGAGTGATTGA
TGGCGGGGTCACCAAGGTTATCGGTCAGCGCCTTGAAATGCATGGCCTTCATGCCGATGGACATGAAATTCCCCTGGAAC
TAGCGATCACCCAACTGCCTACGCACGGACTGTTTACCGGATTCATCCGCGATCTGACCGGACAGAAGCGCACCGAAGAA
GCCTTGCGCCGGTCGCAAAAGCTCGAAGCGGTTGGGCAACTGACTGGGGGGATCGCCCACGACTTCAACAATCTGCTGGG
CATCATCACCGGAAATCTCGAACTGCTTCAGAAGAATTTGGCGAATGACGAAAAAGCAAACCGACGCCTTGATACCGCGT
TGAAAAGCGCTCGCCGGGGAGCCGATCTCACGCGCCGTTTGTTGGCCTTTTCACGGCAGGCCCCAACCGTAGTCGGCAAT
GACCCAATCGACATCAATGATGCGGTTACCGGCATGCTCGACATGCTGCAACGCTCCTTGACCCAAATCGTGCAGGTCAA
GACCAAGCTCGATCCCGCGCTATGGAAAACGGTCGTGAACCGAAGCGAATTCGAAGACGCCTTGCTCAATCTCGCCATAA
ATGCCCGTGATGCCATGCCCGATGGCGGCACCCTTGCCATTGAGACATCCAACATCGTGGTTGAGGCAGAACATGCGCGG
TTCGACCCCAACCTCCAACCCGGTGAATACATTGTCCTGATGGTGAGCGACAGCGGCACCGGGATCAGCAAAGATATCGT
CGATAAGATTTTCGAGCCGTTCTTCACCACCAAGGAAAGGGGCAAAGGCACCGGCCTTGGACTGAGTATGGTTTACGGCT
TTGCCCGACGCTCAGGCGGCCATGTGCGGGTCTATTCGGAACTTGGGGTGGGAACGGCCTTCCGCCTGTACTTCCCCCGT
AGCCATGCCCATGTTGCCGATCCCGGTCAGATTGGAACCGAGACATCCGACATACCTCGTGGCACGGAAACCGTGCTGGT
GATCGACGATGAACTTCACTTGGCCGAGATCGCCGGAGAATTTCTGAGCGACCTAGGGTACGCCCCGATCATCACCACCG
ATACCTCTGAAGCCGTCAGGCTGCTGAAGGAGCGATCCGATATCGACCTGATTTTCTCGGACGTGGTGATGCCGGGGGGC
TTGGATGGCTTTGGTCTCGCCAAACTGGCGACAGACCTTGGACGCAAGGTACTGCTGACCTCGGGCTTCACCGGATATGC
CCACCAGCACCAGAACGACGGCGGCTTTTCTGTGATATCCAAGCCCTACAGCAAGGCGGATTTGGCAAGGATGGTAAGAA
CCATTCTTGATGGATCGGATGGTTCATGA

Upstream 100 bases:

>100_bases
GCCAATCGAACCGGTTTTGCTGCCGCCGAGGTACTTGACGCGTCGCGTATCATGGGCGAGGAGGCCGCCCGGCTGAGATT
AACCATCAACGGATTCTTGG

Downstream 100 bases:

>100_bases
TGACTGATTTGGCAAAAGCAGATCAGCCGCGCGTGCTGATTCTTGATGACGAGCGTGATATGTGCGAATTCGTCGCCGAT
GTCGGGGACGATCAGGGTTT

Product: Signal transduction histidine kinase

Products: NA

Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]

Number of amino acids: Translated: 782; Mature: 782

Protein sequence:

>782_residues
MKSERPREALLFFGVKIMPDYSGLLGMRHFNENPHTHRSLNSNYHRIIAMQGARISANKLIASLTKRQAIVLVSLFILAS
SGFGALEFAVSFLSDDGAIINMAGRQRMLSQRVVSLGYQIITSPSDEAKQSVRSNMENAVASMEAEHQRLIEISVGRGMS
NELNALYFGRAPTLDKSISYFIKRARYFMDLELSGDDRRLPLIVLYDIAMMSRVELLQGLESVVSRYQFESQERANRLLY
SAFIGLLIFTFVLAFSWAGVFRPLARKLREELDAHQVSEEVKSSILDAALDAIVTIDGNGAIIEFNPAAERIFGHLEQDV
VGKEIADLIIPEQHRAAHRAGIARVIDGGVTKVIGQRLEMHGLHADGHEIPLELAITQLPTHGLFTGFIRDLTGQKRTEE
ALRRSQKLEAVGQLTGGIAHDFNNLLGIITGNLELLQKNLANDEKANRRLDTALKSARRGADLTRRLLAFSRQAPTVVGN
DPIDINDAVTGMLDMLQRSLTQIVQVKTKLDPALWKTVVNRSEFEDALLNLAINARDAMPDGGTLAIETSNIVVEAEHAR
FDPNLQPGEYIVLMVSDSGTGISKDIVDKIFEPFFTTKERGKGTGLGLSMVYGFARRSGGHVRVYSELGVGTAFRLYFPR
SHAHVADPGQIGTETSDIPRGTETVLVIDDELHLAEIAGEFLSDLGYAPIITTDTSEAVRLLKERSDIDLIFSDVVMPGG
LDGFGLAKLATDLGRKVLLTSGFTGYAHQHQNDGGFSVISKPYSKADLARMVRTILDGSDGS

Sequences:

>Translated_782_residues
MKSERPREALLFFGVKIMPDYSGLLGMRHFNENPHTHRSLNSNYHRIIAMQGARISANKLIASLTKRQAIVLVSLFILAS
SGFGALEFAVSFLSDDGAIINMAGRQRMLSQRVVSLGYQIITSPSDEAKQSVRSNMENAVASMEAEHQRLIEISVGRGMS
NELNALYFGRAPTLDKSISYFIKRARYFMDLELSGDDRRLPLIVLYDIAMMSRVELLQGLESVVSRYQFESQERANRLLY
SAFIGLLIFTFVLAFSWAGVFRPLARKLREELDAHQVSEEVKSSILDAALDAIVTIDGNGAIIEFNPAAERIFGHLEQDV
VGKEIADLIIPEQHRAAHRAGIARVIDGGVTKVIGQRLEMHGLHADGHEIPLELAITQLPTHGLFTGFIRDLTGQKRTEE
ALRRSQKLEAVGQLTGGIAHDFNNLLGIITGNLELLQKNLANDEKANRRLDTALKSARRGADLTRRLLAFSRQAPTVVGN
DPIDINDAVTGMLDMLQRSLTQIVQVKTKLDPALWKTVVNRSEFEDALLNLAINARDAMPDGGTLAIETSNIVVEAEHAR
FDPNLQPGEYIVLMVSDSGTGISKDIVDKIFEPFFTTKERGKGTGLGLSMVYGFARRSGGHVRVYSELGVGTAFRLYFPR
SHAHVADPGQIGTETSDIPRGTETVLVIDDELHLAEIAGEFLSDLGYAPIITTDTSEAVRLLKERSDIDLIFSDVVMPGG
LDGFGLAKLATDLGRKVLLTSGFTGYAHQHQNDGGFSVISKPYSKADLARMVRTILDGSDGS
>Mature_782_residues
MKSERPREALLFFGVKIMPDYSGLLGMRHFNENPHTHRSLNSNYHRIIAMQGARISANKLIASLTKRQAIVLVSLFILAS
SGFGALEFAVSFLSDDGAIINMAGRQRMLSQRVVSLGYQIITSPSDEAKQSVRSNMENAVASMEAEHQRLIEISVGRGMS
NELNALYFGRAPTLDKSISYFIKRARYFMDLELSGDDRRLPLIVLYDIAMMSRVELLQGLESVVSRYQFESQERANRLLY
SAFIGLLIFTFVLAFSWAGVFRPLARKLREELDAHQVSEEVKSSILDAALDAIVTIDGNGAIIEFNPAAERIFGHLEQDV
VGKEIADLIIPEQHRAAHRAGIARVIDGGVTKVIGQRLEMHGLHADGHEIPLELAITQLPTHGLFTGFIRDLTGQKRTEE
ALRRSQKLEAVGQLTGGIAHDFNNLLGIITGNLELLQKNLANDEKANRRLDTALKSARRGADLTRRLLAFSRQAPTVVGN
DPIDINDAVTGMLDMLQRSLTQIVQVKTKLDPALWKTVVNRSEFEDALLNLAINARDAMPDGGTLAIETSNIVVEAEHAR
FDPNLQPGEYIVLMVSDSGTGISKDIVDKIFEPFFTTKERGKGTGLGLSMVYGFARRSGGHVRVYSELGVGTAFRLYFPR
SHAHVADPGQIGTETSDIPRGTETVLVIDDELHLAEIAGEFLSDLGYAPIITTDTSEAVRLLKERSDIDLIFSDVVMPGG
LDGFGLAKLATDLGRKVLLTSGFTGYAHQHQNDGGFSVISKPYSKADLARMVRTILDGSDGS

Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=383, Percent_Identity=28.4595300261097, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1790436, Length=256, Percent_Identity=27.734375, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI48994928, Length=525, Percent_Identity=25.9047619047619, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1790300, Length=366, Percent_Identity=25.9562841530055, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1786600, Length=436, Percent_Identity=23.6238532110092, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR011006
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 85967; Mature: 85967

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50112 PAS ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSERPREALLFFGVKIMPDYSGLLGMRHFNENPHTHRSLNSNYHRIIAMQGARISANKL
CCCCCCHHHHHHHCCEECCCCHHHHHHHHCCCCCCCHHCCCCCCEEEEEECCCCCCHHHH
IASLTKRQAIVLVSLFILASSGFGALEFAVSFLSDDGAIINMAGRQRMLSQRVVSLGYQI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCHHE
ITSPSDEAKQSVRSNMENAVASMEAEHQRLIEISVGRGMSNELNALYFGRAPTLDKSISY
EECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCEEEECCCCCCHHHHHH
FIKRARYFMDLELSGDDRRLPLIVLYDIAMMSRVELLQGLESVVSRYQFESQERANRLLY
HHHHHHHEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAFIGLLIFTFVLAFSWAGVFRPLARKLREELDAHQVSEEVKSSILDAALDAIVTIDGNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
AIIEFNPAAERIFGHLEQDVVGKEIADLIIPEQHRAAHRAGIARVIDGGVTKVIGQRLEM
EEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HGLHADGHEIPLELAITQLPTHGLFTGFIRDLTGQKRTEEALRRSQKLEAVGQLTGGIAH
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHH
DFNNLLGIITGNLELLQKNLANDEKANRRLDTALKSARRGADLTRRLLAFSRQAPTVVGN
HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECC
DPIDINDAVTGMLDMLQRSLTQIVQVKTKLDPALWKTVVNRSEFEDALLNLAINARDAMP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCCC
DGGTLAIETSNIVVEAEHARFDPNLQPGEYIVLMVSDSGTGISKDIVDKIFEPFFTTKER
CCCEEEEEECCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCC
GKGTGLGLSMVYGFARRSGGHVRVYSELGVGTAFRLYFPRSHAHVADPGQIGTETSDIPR
CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
GTETVLVIDDELHLAEIAGEFLSDLGYAPIITTDTSEAVRLLKERSDIDLIFSDVVMPGG
CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCHHHHHHHHCCCCC
LDGFGLAKLATDLGRKVLLTSGFTGYAHQHQNDGGFSVISKPYSKADLARMVRTILDGSD
CCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCC
GS
CC
>Mature Secondary Structure
MKSERPREALLFFGVKIMPDYSGLLGMRHFNENPHTHRSLNSNYHRIIAMQGARISANKL
CCCCCCHHHHHHHCCEECCCCHHHHHHHHCCCCCCCHHCCCCCCEEEEEECCCCCCHHHH
IASLTKRQAIVLVSLFILASSGFGALEFAVSFLSDDGAIINMAGRQRMLSQRVVSLGYQI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCHHE
ITSPSDEAKQSVRSNMENAVASMEAEHQRLIEISVGRGMSNELNALYFGRAPTLDKSISY
EECCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCEEEECCCCCCHHHHHH
FIKRARYFMDLELSGDDRRLPLIVLYDIAMMSRVELLQGLESVVSRYQFESQERANRLLY
HHHHHHHEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAFIGLLIFTFVLAFSWAGVFRPLARKLREELDAHQVSEEVKSSILDAALDAIVTIDGNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
AIIEFNPAAERIFGHLEQDVVGKEIADLIIPEQHRAAHRAGIARVIDGGVTKVIGQRLEM
EEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HGLHADGHEIPLELAITQLPTHGLFTGFIRDLTGQKRTEEALRRSQKLEAVGQLTGGIAH
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHH
DFNNLLGIITGNLELLQKNLANDEKANRRLDTALKSARRGADLTRRLLAFSRQAPTVVGN
HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECC
DPIDINDAVTGMLDMLQRSLTQIVQVKTKLDPALWKTVVNRSEFEDALLNLAINARDAMP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCCC
DGGTLAIETSNIVVEAEHARFDPNLQPGEYIVLMVSDSGTGISKDIVDKIFEPFFTTKER
CCCEEEEEECCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCC
GKGTGLGLSMVYGFARRSGGHVRVYSELGVGTAFRLYFPRSHAHVADPGQIGTETSDIPR
CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
GTETVLVIDDELHLAEIAGEFLSDLGYAPIITTDTSEAVRLLKERSDIDLIFSDVVMPGG
CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCHHHHHHHHCCCCC
LDGFGLAKLATDLGRKVLLTSGFTGYAHQHQNDGGFSVISKPYSKADLARMVRTILDGSD
CCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCC
GS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA