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The map label for this gene is yhjC [C]

Identifier: 83312269

GI number: 83312269

Start: 3430629

End: 3431315

Strand: Reverse

Name: yhjC [C]

Synonym: amb3170

Alternate gene names: 83312269

Gene position: 3431315-3430629 (Counterclockwise)

Preceding gene: 83312273

Following gene: 83312261

Centisome position: 69.08

GC content: 61.14

Gene sequence:

>687_bases
ATGGCAAAGCCGTCGATCACCGCCGCCGACGATGCCGCACGGGCAATCGCCGAGCGCGAACGGCTTGTCGCGGGCCGAGT
ATCGCTGACCACCACGGCGGCGCTTGGGCAGTATCTGATTACCCCGCATCTGATCAAGCTGACGGCAGCATATCCGGATG
TGCAGGTCGAACTGAGGCTGACTGAACGGCGCGTCAACATCATCAGCGACGGCATCGACCTTGCAGTACGGACGGGCACA
CTTGATGACAGTGACTTGGTCGCTCGCCGTCTTTGCAAGGTCAAGCGCCTGCTTGTGGCATCCCCCGCCTACCTGGCAAA
GGCCGGGGTACCGGTGGCCCCCTCGGACCTTGCCTCGCACAACGCGATCGTCATCAGCGCGGCCCTCGATAGTTGGCGCT
TTGATGGGGGTTGGGAGTGCTCGATGAGATGGACCATTGCTGCCGGCAATATGCTGGTCGCCCATCAACTTGCACGCCTT
CACCATGGGATCGCGCTTCTGCCCGACTTCATGCTTGAAACGGACCTGGACCTGGGCACCTTGATCCACCTGCTGCCGGA
ATATCCAATGGAACAGGCTGATGCCTGGATTGTCAGCAGCCCTCAACGCTACAGGTCGCTCGCGGTTCAAACCGTCTTGA
ACTATCTGGCGGGAGCGAAGAGTGGAGTCTCGGTAGGCCGCCACTGA

Upstream 100 bases:

>100_bases
CCGAAGGCTTGCCGATCTTGAGCTGCTTTTACGCACATCGCTGTTCCAGCGTTCAACGCGAGCCCTATCGCTGACGGATG
AGGGGCAGCGCATCTATGAC

Downstream 100 bases:

>100_bases
CCTGTTTTCATGATTGATCCCGATCAGTGGAAGGGGGGCAGGTCATCGCTGAGTCCAAGCAGATTCGAGCGCCGCTTATC
CCTTCGACCGAGATCGGTCG

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MAKPSITAADDAARAIAERERLVAGRVSLTTTAALGQYLITPHLIKLTAAYPDVQVELRLTERRVNIISDGIDLAVRTGT
LDDSDLVARRLCKVKRLLVASPAYLAKAGVPVAPSDLASHNAIVISAALDSWRFDGGWECSMRWTIAAGNMLVAHQLARL
HHGIALLPDFMLETDLDLGTLIHLLPEYPMEQADAWIVSSPQRYRSLAVQTVLNYLAGAKSGVSVGRH

Sequences:

>Translated_228_residues
MAKPSITAADDAARAIAERERLVAGRVSLTTTAALGQYLITPHLIKLTAAYPDVQVELRLTERRVNIISDGIDLAVRTGT
LDDSDLVARRLCKVKRLLVASPAYLAKAGVPVAPSDLASHNAIVISAALDSWRFDGGWECSMRWTIAAGNMLVAHQLARL
HHGIALLPDFMLETDLDLGTLIHLLPEYPMEQADAWIVSSPQRYRSLAVQTVLNYLAGAKSGVSVGRH
>Mature_227_residues
AKPSITAADDAARAIAERERLVAGRVSLTTTAALGQYLITPHLIKLTAAYPDVQVELRLTERRVNIISDGIDLAVRTGTL
DDSDLVARRLCKVKRLLVASPAYLAKAGVPVAPSDLASHNAIVISAALDSWRFDGGWECSMRWTIAAGNMLVAHQLARLH
HGIALLPDFMLETDLDLGTLIHLLPEYPMEQADAWIVSSPQRYRSLAVQTVLNYLAGAKSGVSVGRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=203, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1789440, Length=199, Percent_Identity=27.1356783919598, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786401, Length=153, Percent_Identity=30.718954248366, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI87081978, Length=198, Percent_Identity=25.7575757575758, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787128, Length=188, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789639, Length=198, Percent_Identity=26.2626262626263, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 24710; Mature: 24579

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPSITAADDAARAIAERERLVAGRVSLTTTAALGQYLITPHLIKLTAAYPDVQVELRL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEEECCCCEEEEEEE
TERRVNIISDGIDLAVRTGTLDDSDLVARRLCKVKRLLVASPAYLAKAGVPVAPSDLASH
EHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHCCC
NAIVISAALDSWRFDGGWECSMRWTIAAGNMLVAHQLARLHHGIALLPDFMLETDLDLGT
CEEEEEEECCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
LIHLLPEYPMEQADAWIVSSPQRYRSLAVQTVLNYLAGAKSGVSVGRH
HHHHHCCCCHHHCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AKPSITAADDAARAIAERERLVAGRVSLTTTAALGQYLITPHLIKLTAAYPDVQVELRL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEEECCCCEEEEEEE
TERRVNIISDGIDLAVRTGTLDDSDLVARRLCKVKRLLVASPAYLAKAGVPVAPSDLASH
EHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHCCC
NAIVISAALDSWRFDGGWECSMRWTIAAGNMLVAHQLARLHHGIALLPDFMLETDLDLGT
CEEEEEEECCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
LIHLLPEYPMEQADAWIVSSPQRYRSLAVQTVLNYLAGAKSGVSVGRH
HHHHHCCCCHHHCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]