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The map label for this gene is sodC1 [H]

Identifier: 83312077

GI number: 83312077

Start: 3212867

End: 3213397

Strand: Reverse

Name: sodC1 [H]

Synonym: amb2978

Alternate gene names: 83312077

Gene position: 3213397-3212867 (Counterclockwise)

Preceding gene: 83312085

Following gene: 83312069

Centisome position: 64.69

GC content: 69.68

Gene sequence:

>531_bases
ATGGGACGGACATTGGTTTTCGCGGCCCTCGGACTGATGATCGCGTCGGGTCCGGCACTGGCCGCCGAGTTGGTCATTCC
GGTCAGCGCGATCGATGCCAGCGGAGTGGGCGCCATCATCGGCAGCCTCAAGGTCAAGGACGGCAAGGGCGGCATGATGG
TGACGCCCAGGTTGGCGGGGCTGACGCCGGGCCCGCACGGCTTCCACATTCATGAAAACCCCAGCTGCCAGCCCAAGGAG
CAGGACGGCAAGCCGGTGCCGGGCCTGTCGGCGGGCGGCCACTACGATCCCGCCAAGGCGGGCAAGCATGAAGGTCCCTG
GGGCCACGGCCATCTGGGCGACCTGCCGGCCCTGGCGGTCAACGGCGACGGAACGGCCACCGATCCGGTGGTGGTGCCCA
AGCTGAAGGTGGCCGATCTCAAGGGGCGCGCCGTGGTCATCCATGCCGGGGCGGACAATTATGCCGACCAGCCCAAGCCC
CTGGGCGGCGGCGGCGGGCGGGTCGCCTGCGGCGTGGTGCCGGCGAAATAG

Upstream 100 bases:

>100_bases
ATGCCTGACGCCCGGTTGATAATGCCCGGACGGGTGATCACCTTGGGGGGAGTGGACCGCCGCCCCCTGGCGGACCCGTG
AGCGCACAGCGGGAGGAAGC

Downstream 100 bases:

>100_bases
GGCAGAGGCGAGTTCCGGCGGAGTTGCCGAGGGGGCGGTATCGCGCCAGTCCCCCTCGGCCCAACGCCCCGGCAACGGGG
GCGTCAGATGATTTCCTCGC

Product: Cu/Zn superoxide dismutase

Products: NA

Alternate protein names: sodCI [H]

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MGRTLVFAALGLMIASGPALAAELVIPVSAIDASGVGAIIGSLKVKDGKGGMMVTPRLAGLTPGPHGFHIHENPSCQPKE
QDGKPVPGLSAGGHYDPAKAGKHEGPWGHGHLGDLPALAVNGDGTATDPVVVPKLKVADLKGRAVVIHAGADNYADQPKP
LGGGGGRVACGVVPAK

Sequences:

>Translated_176_residues
MGRTLVFAALGLMIASGPALAAELVIPVSAIDASGVGAIIGSLKVKDGKGGMMVTPRLAGLTPGPHGFHIHENPSCQPKE
QDGKPVPGLSAGGHYDPAKAGKHEGPWGHGHLGDLPALAVNGDGTATDPVVVPKLKVADLKGRAVVIHAGADNYADQPKP
LGGGGGRVACGVVPAK
>Mature_175_residues
GRTLVFAALGLMIASGPALAAELVIPVSAIDASGVGAIIGSLKVKDGKGGMMVTPRLAGLTPGPHGFHIHENPSCQPKEQ
DGKPVPGLSAGGHYDPAKAGKHEGPWGHGHLGDLPALAVNGDGTATDPVVVPKLKVADLKGRAVVIHAGADNYADQPKPL
GGGGGRVACGVVPAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=172, Percent_Identity=51.7441860465116, Blast_Score=174, Evalue=4e-45,
Organism=Caenorhabditis elegans, GI17554806, Length=185, Percent_Identity=30.2702702702703, Blast_Score=63, Evalue=8e-11,
Organism=Drosophila melanogaster, GI85725006, Length=166, Percent_Identity=35.5421686746988, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45551081, Length=166, Percent_Identity=35.5421686746988, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24652737, Length=166, Percent_Identity=35.5421686746988, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007680, Length=163, Percent_Identity=35.5828220858896, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI281363087, Length=125, Percent_Identity=37.6, Blast_Score=63, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24652342, Length=125, Percent_Identity=37.6, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17467; Mature: 17336

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRTLVFAALGLMIASGPALAAELVIPVSAIDASGVGAIIGSLKVKDGKGGMMVTPRLAG
CCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEECCHHCC
LTPGPHGFHIHENPSCQPKEQDGKPVPGLSAGGHYDPAKAGKHEGPWGHGHLGDLPALAV
CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
NGDGTATDPVVVPKLKVADLKGRAVVIHAGADNYADQPKPLGGGGGRVACGVVPAK
CCCCCCCCCEEECCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
GRTLVFAALGLMIASGPALAAELVIPVSAIDASGVGAIIGSLKVKDGKGGMMVTPRLAG
CCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEECCHHCC
LTPGPHGFHIHENPSCQPKEQDGKPVPGLSAGGHYDPAKAGKHEGPWGHGHLGDLPALAV
CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
NGDGTATDPVVVPKLKVADLKGRAVVIHAGADNYADQPKPLGGGGGRVACGVVPAK
CCCCCCCCCEEECCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9379906; 9391141; 11677609; 8869506; 10970746 [H]