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The map label for this gene is yciR [C]

Identifier: 83311792

GI number: 83311792

Start: 2884785

End: 2886431

Strand: Reverse

Name: yciR [C]

Synonym: amb2694

Alternate gene names: 83311792

Gene position: 2886431-2884785 (Counterclockwise)

Preceding gene: 83311794

Following gene: 83311791

Centisome position: 58.11

GC content: 65.09

Gene sequence:

>1647_bases
ATGAATGACATCCAAGCCCTTCTGAACGGCCTTCTCGATTCCATCAACGACGCGGTGATCATCGCCGATGGCGATGGCAA
TCCCTTGCGCTCCAATCCCGCCTTCGAGACGTTGATGGGATTTACGTCCAAGGGAGGGGCCGAGGTTTCCCGCCTGGCGG
CCGGCATGATCTATCGGGCGATCAATCCGGGGGCCGGGGGACGCTGGCGCGGCCTGGTCACCTGTCCCGATGGCCGCGAG
CGCCCCTTCGAGGTTACTGCCGCCGCCATTAATCCCTCGACCGATTCCGCCGACCGCTATCTCTGCGTCGTGCGTCCCGC
CATCGCCGAGGAGGCCGGCGCCGCCGGGGGGAGCTTCGGCTACGACACCCTGACCGGTCTGCCCAACCGCGACCTGTTCG
GCGACCGCATCGGCCAGGCGGTGTTGCAGGCCAATCGCACCGGGGCCTCGGTGGCGCTGATGACCATGGGGTTGGACCGC
TTCACCCTGGTCAACGACGCCCTGGGCCATGGGGCCGGCGACCGGCTGCTGATGGAGGTGGCCCGGCGCCTGAAGATGTG
CGTACGCGAGACCGATACGGCGGTGCGCCTGGACGGCGACAAGTTCGCCCTGGTGATGGCCATCGCCGATACCGACGACA
GCGTCATCGTCGCCGAGAAGGCGCTGAACGCCGTCAAGGAGCCCTTCGCCCTGGACGGCCAGGAAGTGGTGGTGACCTTT
TCCATCGGCATCAGCGTCTACCCCCTGGACGCCGATTCCAGCGCCCAACTGGTCAAGCACGCCGAGAACGCGCTGCATTA
CGCCAAGGTCTCGGGGCGCAACCAGTACCAGTTCTTCTCCAAGGACATGAACCGCAAGGCCAAGTCGCGGCTGGAGCTTG
AGGGCCGCATGCGGCGCGCCCTGGCCAACCAGGAGTTCGTGGTCTTCTACCAGCCCAAGGTCTCCGCCGATCGCGACGCC
ATCGTGGGCGCCGAGGCGCTGATCCGCTGGATGGACCCCGAGCGCGGCATGGTCCCGCCCGGCGAGTTCATTCCCGTCGC
CGAGGAAAGCGGCCAAATCGAGCCCATCGGCACCTGGGTCCTGCGTCAGTCCTGCATCCAGAACCGCCTTTGGCAGGAAG
CGGGCTTCAATCCCATCAAGGTGTCGGTCAACGTCTCGGCGCGCCAGTTCCGCTCGCCCTCGCTGCTGCAGACCGTGACC
GAGGTTCTGGACTCCACCGGGCTCGATCCCAAGTGGCTGGAACTGGAGATCACCGAGTCCATGCTGATGAACGACGTGGA
TACGGCGGTGCGCAAGATGAAGGCGCTGCGCGATCTCGGCATCGGCCTGTCCATCGACGATTTCGGCACCGGCTATTCCT
CGCTCAGCTATCTGGGGCGCTTCCCCATCACCACCTTGAAGATCGACCGGGCCTTCATTGCCGACGTCGACACCAATCCC
AAGACGGCCGAGATCGCCCGGGCCATCATCGGCCTGTCGCGCGGTCTCAACCTGGAGGTGGTGGCCGAGGGCGCCGAAAT
CGCCGAGCACATCATGTTCCTGCGCAACAATGGATGCGATACCGTACAAGGGTTCTATTACTCTCGGCCTGTGCCCGCCG
ATGAGTTCGAGCGTATGATGGGCCAAAGGGTCATGGCCCACGCCTGA

Upstream 100 bases:

>100_bases
AACCCCCAAATCGCCGCCCCGGGGACGACGCGGCTTGGGGGGCGTAAATGAAGATTGCGAATCCGTTGGCAATTTGAAAG
ATTGTGCCGCACGGTGACCC

Downstream 100 bases:

>100_bases
TCACCCATTACGGTAAGTTTTAGCCATACTTCGTCATGGTCTTTTGACCAACGTCAAAGCGCCTGAGTCAGTGCGGTGAC
ACCTTTCCGTCATCTGGCGC

Product: signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MNDIQALLNGLLDSINDAVIIADGDGNPLRSNPAFETLMGFTSKGGAEVSRLAAGMIYRAINPGAGGRWRGLVTCPDGRE
RPFEVTAAAINPSTDSADRYLCVVRPAIAEEAGAAGGSFGYDTLTGLPNRDLFGDRIGQAVLQANRTGASVALMTMGLDR
FTLVNDALGHGAGDRLLMEVARRLKMCVRETDTAVRLDGDKFALVMAIADTDDSVIVAEKALNAVKEPFALDGQEVVVTF
SIGISVYPLDADSSAQLVKHAENALHYAKVSGRNQYQFFSKDMNRKAKSRLELEGRMRRALANQEFVVFYQPKVSADRDA
IVGAEALIRWMDPERGMVPPGEFIPVAEESGQIEPIGTWVLRQSCIQNRLWQEAGFNPIKVSVNVSARQFRSPSLLQTVT
EVLDSTGLDPKWLELEITESMLMNDVDTAVRKMKALRDLGIGLSIDDFGTGYSSLSYLGRFPITTLKIDRAFIADVDTNP
KTAEIARAIIGLSRGLNLEVVAEGAEIAEHIMFLRNNGCDTVQGFYYSRPVPADEFERMMGQRVMAHA

Sequences:

>Translated_548_residues
MNDIQALLNGLLDSINDAVIIADGDGNPLRSNPAFETLMGFTSKGGAEVSRLAAGMIYRAINPGAGGRWRGLVTCPDGRE
RPFEVTAAAINPSTDSADRYLCVVRPAIAEEAGAAGGSFGYDTLTGLPNRDLFGDRIGQAVLQANRTGASVALMTMGLDR
FTLVNDALGHGAGDRLLMEVARRLKMCVRETDTAVRLDGDKFALVMAIADTDDSVIVAEKALNAVKEPFALDGQEVVVTF
SIGISVYPLDADSSAQLVKHAENALHYAKVSGRNQYQFFSKDMNRKAKSRLELEGRMRRALANQEFVVFYQPKVSADRDA
IVGAEALIRWMDPERGMVPPGEFIPVAEESGQIEPIGTWVLRQSCIQNRLWQEAGFNPIKVSVNVSARQFRSPSLLQTVT
EVLDSTGLDPKWLELEITESMLMNDVDTAVRKMKALRDLGIGLSIDDFGTGYSSLSYLGRFPITTLKIDRAFIADVDTNP
KTAEIARAIIGLSRGLNLEVVAEGAEIAEHIMFLRNNGCDTVQGFYYSRPVPADEFERMMGQRVMAHA
>Mature_548_residues
MNDIQALLNGLLDSINDAVIIADGDGNPLRSNPAFETLMGFTSKGGAEVSRLAAGMIYRAINPGAGGRWRGLVTCPDGRE
RPFEVTAAAINPSTDSADRYLCVVRPAIAEEAGAAGGSFGYDTLTGLPNRDLFGDRIGQAVLQANRTGASVALMTMGLDR
FTLVNDALGHGAGDRLLMEVARRLKMCVRETDTAVRLDGDKFALVMAIADTDDSVIVAEKALNAVKEPFALDGQEVVVTF
SIGISVYPLDADSSAQLVKHAENALHYAKVSGRNQYQFFSKDMNRKAKSRLELEGRMRRALANQEFVVFYQPKVSADRDA
IVGAEALIRWMDPERGMVPPGEFIPVAEESGQIEPIGTWVLRQSCIQNRLWQEAGFNPIKVSVNVSARQFRSPSLLQTVT
EVLDSTGLDPKWLELEITESMLMNDVDTAVRKMKALRDLGIGLSIDDFGTGYSSLSYLGRFPITTLKIDRAFIADVDTNP
KTAEIARAIIGLSRGLNLEVVAEGAEIAEHIMFLRNNGCDTVQGFYYSRPVPADEFERMMGQRVMAHA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=542, Percent_Identity=34.3173431734317, Blast_Score=308, Evalue=4e-85,
Organism=Escherichia coli, GI87081921, Length=421, Percent_Identity=37.7672209026128, Blast_Score=297, Evalue=1e-81,
Organism=Escherichia coli, GI226510982, Length=418, Percent_Identity=29.9043062200957, Blast_Score=186, Evalue=4e-48,
Organism=Escherichia coli, GI1790496, Length=316, Percent_Identity=29.1139240506329, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=35.3909465020576, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=33.3333333333333, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=32.5102880658436, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=32.6359832635983, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081743, Length=250, Percent_Identity=32.4, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1787055, Length=244, Percent_Identity=31.9672131147541, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=29.2490118577075, Blast_Score=102, Evalue=9e-23,
Organism=Escherichia coli, GI87082096, Length=425, Percent_Identity=21.4117647058824, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=29.5180722891566, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788381, Length=554, Percent_Identity=22.2021660649819, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081881, Length=219, Percent_Identity=27.3972602739726, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=152, Percent_Identity=34.2105263157895, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786584, Length=161, Percent_Identity=27.3291925465839, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787410, Length=137, Percent_Identity=28.4671532846715, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=31.6455696202532, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081974, Length=85, Percent_Identity=32.9411764705882, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787802, Length=160, Percent_Identity=26.25, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 59720; Mature: 59720

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDIQALLNGLLDSINDAVIIADGDGNPLRSNPAFETLMGFTSKGGAEVSRLAAGMIYRA
CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHC
INPGAGGRWRGLVTCPDGRERPFEVTAAAINPSTDSADRYLCVVRPAIAEEAGAAGGSFG
CCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEECHHHHHHCCCCCCCCC
YDTLTGLPNRDLFGDRIGQAVLQANRTGASVALMTMGLDRFTLVNDALGHGAGDRLLMEV
CHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHHHH
ARRLKMCVRETDTAVRLDGDKFALVMAIADTDDSVIVAEKALNAVKEPFALDGQEVVVTF
HHHHHHHHHCCCCEEEECCCCEEEEEEEECCCCCEEEHHHHHHHHHCCCCCCCCEEEEEE
SIGISVYPLDADSSAQLVKHAENALHYAKVSGRNQYQFFSKDMNRKAKSRLELEGRMRRA
EECEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LANQEFVVFYQPKVSADRDAIVGAEALIRWMDPERGMVPPGEFIPVAEESGQIEPIGTWV
HCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
LRQSCIQNRLWQEAGFNPIKVSVNVSARQFRSPSLLQTVTEVLDSTGLDPKWLELEITES
HHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHH
MLMNDVDTAVRKMKALRDLGIGLSIDDFGTGYSSLSYLGRFPITTLKIDRAFIADVDTNP
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHCCCCEEEEECCEEEEECCCCC
KTAEIARAIIGLSRGLNLEVVAEGAEIAEHIMFLRNNGCDTVQGFYYSRPVPADEFERMM
CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHH
GQRVMAHA
HHHHHHCC
>Mature Secondary Structure
MNDIQALLNGLLDSINDAVIIADGDGNPLRSNPAFETLMGFTSKGGAEVSRLAAGMIYRA
CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHC
INPGAGGRWRGLVTCPDGRERPFEVTAAAINPSTDSADRYLCVVRPAIAEEAGAAGGSFG
CCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEECHHHHHHCCCCCCCCC
YDTLTGLPNRDLFGDRIGQAVLQANRTGASVALMTMGLDRFTLVNDALGHGAGDRLLMEV
CHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHHHH
ARRLKMCVRETDTAVRLDGDKFALVMAIADTDDSVIVAEKALNAVKEPFALDGQEVVVTF
HHHHHHHHHCCCCEEEECCCCEEEEEEEECCCCCEEEHHHHHHHHHCCCCCCCCEEEEEE
SIGISVYPLDADSSAQLVKHAENALHYAKVSGRNQYQFFSKDMNRKAKSRLELEGRMRRA
EECEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LANQEFVVFYQPKVSADRDAIVGAEALIRWMDPERGMVPPGEFIPVAEESGQIEPIGTWV
HCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
LRQSCIQNRLWQEAGFNPIKVSVNVSARQFRSPSLLQTVTEVLDSTGLDPKWLELEITES
HHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHH
MLMNDVDTAVRKMKALRDLGIGLSIDDFGTGYSSLSYLGRFPITTLKIDRAFIADVDTNP
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHCCCCEEEEECCEEEEECCCCC
KTAEIARAIIGLSRGLNLEVVAEGAEIAEHIMFLRNNGCDTVQGFYYSRPVPADEFERMM
CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHH
GQRVMAHA
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]