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The map label for this gene is hycF [C]

Identifier: 83311764

GI number: 83311764

Start: 2856066

End: 2858075

Strand: Reverse

Name: hycF [C]

Synonym: amb2665

Alternate gene names: 83311764

Gene position: 2858075-2856066 (Counterclockwise)

Preceding gene: 83311774

Following gene: 83311760

Centisome position: 57.54

GC content: 71.39

Gene sequence:

>2010_bases
ATGAAGGTTGGCGGCAAGCGGGTGATGCTGTGTTCGTGCGAGGGAACCATGCCCCTCGACGTCAAGGCCCTGGCCAGGGC
GCTGGGGACCGAGCCGCCGGATCAGGTGTATTTCCAGCTTTGCCGCTCGCAGGTCGACGCCTTTCGTCAGGCGGCCGCCT
CGGGCGAGGAATTGCTGGTGGCCTGCGGTCAGGAGGCGCCGCTGTTCGCCGAACTGGCCCGCCTTGCCGAGGCGCCCGAG
CCGGTCTGCGTCGATATCCGCGACCGGGCCGGCTGGTCGGGCGAGGCGGCCCGTGCCACTCCCAAGATCGCCGCCCTGAT
CTCCGAGGCGGTGCAGGAGCCCGAGCCCACCCCCAGCGTGACCCTGACCAGCGCGGGCTCGGTCCTGATTCTCGGGCGCG
GGCCGGAGGTGCTGGAGGCGGCGCGGCGGCTGGGGGCCGAGCGCGCAGTGACCTGCCTGCTGCTGCCCGGCCATGACGGC
CATCTGGTGCCGCCGCCGGTGCGGGCGCTGGGACTGTTTCGGGGCAAGCCGCTGCGCGCCTCGGGCCATCTGGGGGCCTT
CAAGGTCAGCGTCGGCGAGCTGGCCGGCGCTTCGCCCTCCGCCCGGGGGGCGCTCAGTTTCGACGGCGCGGTGGGCGGCC
GCGATCTGGCCGCCGATCTGGTGCTGGACCTCAGCGGCGAGCCCGCCTTGCTGGCGCCCCGTGATGGCTGGTTCAAGATG
GAGCCCAACGACGTCGTGGCCCTGGAGCGGGCGCTGGCCGAGATCGGCGGGTTGGTGGGCGAGTTCGAGAAACCCCGCTG
GATCAAGGTGGAGGCGGCGCTGTGCGCCCATTCCCGCAACGGTCAGGTGGCCTGTACCCGCTGCCTCGACGCCTGTCCGT
CGGGAGCGCTCTCCCCACAGGGCGACGCGGCGGCGGTGGATGCCCATGTGTGCGGCGGGCATGGCCCGTGCGCCTCGGTG
TGTCCCACCGGGGCCATCCGCTTCGACGTTCCCGCCGGCAACGGGGTCTATACCCGCCTGAGTGTGCTGTTGGAGACCCA
TCGTGGGGCCGGGGGCGGCTCGCCCGTGCTCCTCATCCATGATGGTCAGGGGGCCGAGGCGCTGGCGGCGCTGGCCCGCT
TCGGCGATGGCCTGCCCGCCGACGTCATCCCCATGCAGGTGGCTGCCCTGGCGGCGCTGGGGCCGGAACTCCTGTTGACG
GCCCTGGCCAAGGGAGCGGGCGAGGTGCTGCTGCTGGCCGATCCGGCCAAGCGTCATGACCTGGACGGGGTTCGTGCCGC
CGTCGCCCTCGCCAATCGGGTGGCCGAGGGGCTGGGCTGGGCCTGCCGTGTCCGGCTGGAGGCCGAAGCCGATCCGACCG
CCATCGCCGCGTTCCTTGCCGCCAAGGCGCCCCGGCCGGTGGAGCCGGCCGCCGAGTTCCTGGTGCTGGGCGGCAAGCGC
CAGACCCTGGGGCTGGCGCTCACCCATCTGCATCGGCACGCCCCCGCCCCGGTGGCGGTGTTGCCGCTGGAGGCCGGCGA
TCCCTTCGGCACCATCGCCGTGGATCAGGCCAAGTGCACGCTGTGCATGGCCTGTGTCTCGGCCTGTCCGGCCAAGGCGC
TGTCCGGTCATCCCGACAAGCCGTCGCTGGGCATTCTGGAGGTCAATTGCGTCCAGTGCGGCCTGTGCCGGGTCACCTGT
CCGGAAAAGGCGGTGAGCCTGCTGCCCCGTCTGGCCTTCGGCTCAGAGGCGCGGCTGCGTCAGGTGCTGAAGGAGGAGGA
GCCCTACGAGTGCATCCGCTGCGGCAAGCCCTTCGCCTCGAAATCGGTGATCGAGCGCATGACCGAGCGCATGAGCAATC
ATGCCATGTTCAAGGGCACCGGCAAGCTGGACCTCATCAAGATGTGCGAGGATTGCCGCGTGGTCGCCCAATACCAGCTG
GAGGAGGGTGCCCGCCCCCTGGCCGGGGCCGAGCCGCCCGTCACCCGGACCACCGAGGATTATCTGAGGGAGCGGGACGA
AAAGGGTTAA

Upstream 100 bases:

>100_bases
CAGCATGTCTTTGTCGTTCATTCTTGGCCTCCTGGTCTTTACAGTATGCGGCCCCGGCCCGACCTACAATGGGCCGGAAA
CGAAATAAGGGACGAGGCAC

Downstream 100 bases:

>100_bases
TAGGCCGTCCCGTCCTTGTGCAGAAACCGCCACGTGCCGTCCTTGTCCTGCACGGCGGCGATGTCGTCGTCGGGATAGGT
GGCGGTGTCGCCGGGCGTGC

Product: ferredoxin

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: 4Fe-4S Ferredoxin; 4fe-4S Ferredoxin; Methyl-Viologen-Reducing Hydrogenase Delta Subunit; Polyferredoxins

Number of amino acids: Translated: 669; Mature: 669

Protein sequence:

>669_residues
MKVGGKRVMLCSCEGTMPLDVKALARALGTEPPDQVYFQLCRSQVDAFRQAAASGEELLVACGQEAPLFAELARLAEAPE
PVCVDIRDRAGWSGEAARATPKIAALISEAVQEPEPTPSVTLTSAGSVLILGRGPEVLEAARRLGAERAVTCLLLPGHDG
HLVPPPVRALGLFRGKPLRASGHLGAFKVSVGELAGASPSARGALSFDGAVGGRDLAADLVLDLSGEPALLAPRDGWFKM
EPNDVVALERALAEIGGLVGEFEKPRWIKVEAALCAHSRNGQVACTRCLDACPSGALSPQGDAAAVDAHVCGGHGPCASV
CPTGAIRFDVPAGNGVYTRLSVLLETHRGAGGGSPVLLIHDGQGAEALAALARFGDGLPADVIPMQVAALAALGPELLLT
ALAKGAGEVLLLADPAKRHDLDGVRAAVALANRVAEGLGWACRVRLEAEADPTAIAAFLAAKAPRPVEPAAEFLVLGGKR
QTLGLALTHLHRHAPAPVAVLPLEAGDPFGTIAVDQAKCTLCMACVSACPAKALSGHPDKPSLGILEVNCVQCGLCRVTC
PEKAVSLLPRLAFGSEARLRQVLKEEEPYECIRCGKPFASKSVIERMTERMSNHAMFKGTGKLDLIKMCEDCRVVAQYQL
EEGARPLAGAEPPVTRTTEDYLRERDEKG

Sequences:

>Translated_669_residues
MKVGGKRVMLCSCEGTMPLDVKALARALGTEPPDQVYFQLCRSQVDAFRQAAASGEELLVACGQEAPLFAELARLAEAPE
PVCVDIRDRAGWSGEAARATPKIAALISEAVQEPEPTPSVTLTSAGSVLILGRGPEVLEAARRLGAERAVTCLLLPGHDG
HLVPPPVRALGLFRGKPLRASGHLGAFKVSVGELAGASPSARGALSFDGAVGGRDLAADLVLDLSGEPALLAPRDGWFKM
EPNDVVALERALAEIGGLVGEFEKPRWIKVEAALCAHSRNGQVACTRCLDACPSGALSPQGDAAAVDAHVCGGHGPCASV
CPTGAIRFDVPAGNGVYTRLSVLLETHRGAGGGSPVLLIHDGQGAEALAALARFGDGLPADVIPMQVAALAALGPELLLT
ALAKGAGEVLLLADPAKRHDLDGVRAAVALANRVAEGLGWACRVRLEAEADPTAIAAFLAAKAPRPVEPAAEFLVLGGKR
QTLGLALTHLHRHAPAPVAVLPLEAGDPFGTIAVDQAKCTLCMACVSACPAKALSGHPDKPSLGILEVNCVQCGLCRVTC
PEKAVSLLPRLAFGSEARLRQVLKEEEPYECIRCGKPFASKSVIERMTERMSNHAMFKGTGKLDLIKMCEDCRVVAQYQL
EEGARPLAGAEPPVTRTTEDYLRERDEKG
>Mature_669_residues
MKVGGKRVMLCSCEGTMPLDVKALARALGTEPPDQVYFQLCRSQVDAFRQAAASGEELLVACGQEAPLFAELARLAEAPE
PVCVDIRDRAGWSGEAARATPKIAALISEAVQEPEPTPSVTLTSAGSVLILGRGPEVLEAARRLGAERAVTCLLLPGHDG
HLVPPPVRALGLFRGKPLRASGHLGAFKVSVGELAGASPSARGALSFDGAVGGRDLAADLVLDLSGEPALLAPRDGWFKM
EPNDVVALERALAEIGGLVGEFEKPRWIKVEAALCAHSRNGQVACTRCLDACPSGALSPQGDAAAVDAHVCGGHGPCASV
CPTGAIRFDVPAGNGVYTRLSVLLETHRGAGGGSPVLLIHDGQGAEALAALARFGDGLPADVIPMQVAALAALGPELLLT
ALAKGAGEVLLLADPAKRHDLDGVRAAVALANRVAEGLGWACRVRLEAEADPTAIAAFLAAKAPRPVEPAAEFLVLGGKR
QTLGLALTHLHRHAPAPVAVLPLEAGDPFGTIAVDQAKCTLCMACVSACPAKALSGHPDKPSLGILEVNCVQCGLCRVTC
PEKAVSLLPRLAFGSEARLRQVLKEEEPYECIRCGKPFASKSVIERMTERMSNHAMFKGTGKLDLIKMCEDCRVVAQYQL
EEGARPLAGAEPPVTRTTEDYLRERDEKG

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69774; Mature: 69774

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVGGKRVMLCSCEGTMPLDVKALARALGTEPPDQVYFQLCRSQVDAFRQAAASGEELLV
CCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
ACGQEAPLFAELARLAEAPEPVCVDIRDRAGWSGEAARATPKIAALISEAVQEPEPTPSV
ECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
TLTSAGSVLILGRGPEVLEAARRLGAERAVTCLLLPGHDGHLVPPPVRALGLFRGKPLRA
EEECCCCEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCC
SGHLGAFKVSVGELAGASPSARGALSFDGAVGGRDLAADLVLDLSGEPALLAPRDGWFKM
CCCCCEEEEEHHHHCCCCCCCCCCEEECCCCCCCHHEEEHEEECCCCCCEECCCCCCEEE
EPNDVVALERALAEIGGLVGEFEKPRWIKVEAALCAHSRNGQVACTRCLDACPSGALSPQ
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCCCCCCCCC
GDAAAVDAHVCGGHGPCASVCPTGAIRFDVPAGNGVYTRLSVLLETHRGAGGGSPVLLIH
CCCEEEEEEECCCCCCHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEE
DGQGAEALAALARFGDGLPADVIPMQVAALAALGPELLLTALAKGAGEVLLLADPAKRHD
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCHHHCC
LDGVRAAVALANRVAEGLGWACRVRLEAEADPTAIAAFLAAKAPRPVEPAAEFLVLGGKR
CHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHEEECCCC
QTLGLALTHLHRHAPAPVAVLPLEAGDPFGTIAVDQAKCTLCMACVSACPAKALSGHPDK
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECHHHHHHHHHHHHHCCHHHHCCCCCC
PSLGILEVNCVQCGLCRVTCPEKAVSLLPRLAFGSEARLRQVLKEEEPYECIRCGKPFAS
CCCEEEEEEEEEECCEEEECHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCH
KSVIERMTERMSNHAMFKGTGKLDLIKMCEDCRVVAQYQLEEGARPLAGAEPPVTRTTED
HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
YLRERDEKG
HHHHCCCCC
>Mature Secondary Structure
MKVGGKRVMLCSCEGTMPLDVKALARALGTEPPDQVYFQLCRSQVDAFRQAAASGEELLV
CCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
ACGQEAPLFAELARLAEAPEPVCVDIRDRAGWSGEAARATPKIAALISEAVQEPEPTPSV
ECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
TLTSAGSVLILGRGPEVLEAARRLGAERAVTCLLLPGHDGHLVPPPVRALGLFRGKPLRA
EEECCCCEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCC
SGHLGAFKVSVGELAGASPSARGALSFDGAVGGRDLAADLVLDLSGEPALLAPRDGWFKM
CCCCCEEEEEHHHHCCCCCCCCCCEEECCCCCCCHHEEEHEEECCCCCCEECCCCCCEEE
EPNDVVALERALAEIGGLVGEFEKPRWIKVEAALCAHSRNGQVACTRCLDACPSGALSPQ
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCCCCCCCCC
GDAAAVDAHVCGGHGPCASVCPTGAIRFDVPAGNGVYTRLSVLLETHRGAGGGSPVLLIH
CCCEEEEEEECCCCCCHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEE
DGQGAEALAALARFGDGLPADVIPMQVAALAALGPELLLTALAKGAGEVLLLADPAKRHD
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCHHHCC
LDGVRAAVALANRVAEGLGWACRVRLEAEADPTAIAAFLAAKAPRPVEPAAEFLVLGGKR
CHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHEEECCCC
QTLGLALTHLHRHAPAPVAVLPLEAGDPFGTIAVDQAKCTLCMACVSACPAKALSGHPDK
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECHHHHHHHHHHHHHCCHHHHCCCCCC
PSLGILEVNCVQCGLCRVTCPEKAVSLLPRLAFGSEARLRQVLKEEEPYECIRCGKPFAS
CCCEEEEEEEEEECCEEEECHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCH
KSVIERMTERMSNHAMFKGTGKLDLIKMCEDCRVVAQYQLEEGARPLAGAEPPVTRTTED
HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
YLRERDEKG
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA