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The map label for this gene is yfdE [H]

Identifier: 83310752

GI number: 83310752

Start: 1789934

End: 1791277

Strand: Reverse

Name: yfdE [H]

Synonym: amb1653

Alternate gene names: 83310752

Gene position: 1791277-1789934 (Counterclockwise)

Preceding gene: 83310753

Following gene: 83310751

Centisome position: 36.06

GC content: 68.45

Gene sequence:

>1344_bases
GTGCGGATTGCTGCTGTTCGTCGGCATGAAGGACACCAAGAAGACCTCGCTGATCGACCAGGACTGACCCTCCTGTCCCC
CGGCGGCTCCAGCCCGGAGCCGCCGGTTTTTTCATTTTCCAAGGACAGCATCATGACCGGACCCTTGTCGCATCTTCGCG
TTCTCGATCTCAGCCGGGTTCTGGCCGGTCCCTGGGCGGGCCAGTTGCTGGCCGACATGGGGGCCGAGGTCATCAAGGTG
GAGCGTCCGGGCGAGGGTGACGACACCCGCGGCTGGGGGCCGCCCTTCTTGAAGGACGGCCAGGGCGGCGACACCGGCGA
GGCCGCCTATTTCCTGTCGGCCAACCGGGGCAAGCGCTCGGTGACCATCGACTTCACTCAAGCCCAGGGCCAGGAACTGG
TGCGGCGTCTGGCCGCCAGATCCGACGTGGTGCTGGAGAATTTCAAGGTGGGCGGCCTGGCCAAATACGGCCTGGACTAT
GCCAGCCTGAAGGCGGTCAAGCCCGACCTGGTCTATTGCTCCATCACCGGCTTCGGCCAGGACGGACCCTATGCCCAGCG
GGCCGGCTACGACTTCCTGATCCAGGGCATGGGCGGGCTGATGAGCCTGACCGGCGAGCCCGGCGGCCAGCCCATGAAGG
TGGGCGTGGCGCTGACCGACATCTTCACCGGCATGTATGCCGGCTTCGCCATCCTCGCCGCCCTGGCCAAGCGCGACCGC
ACGGGCGAGGGCAGCCAGATCGACCTCGCCCTGCTGGATGTGCAGGTGGCGGTGCTGGCCAATCAGGCCACCAATTATCT
GGTGGGCGGCGCCACGCCGAAGCGGCTGGGCAACGCCCATCCCAACATCGTGCCCTATCAGGCCTTCGCCACCGCCGACG
GCCATATCATCCTGGCGGTGGGCAATGACGGCCAGTTCCGCCGCTTCTGCCACACCGCCGGGCGGCCCGAACTGGGCGCC
GATCCCCGCTTCGCCACCAATGTGGAGCGGGTAAGGAACCGCGCCGAGCTGGTCCCCCTCCTCGAAGCCCTGCTGACGTC
GCGCCCCTCCGCCCGATGGATCGCCGAACTGGAGGAGGCCGGGGTGCCCTGCGGCCCCATCAACGATCTGGCCAACGTGT
TCGCCGATCCCCAGGTGATCCATCGCGGCCTCAGGACCCGCCTGGACCACCCCCTGGCCGGCGGCATCGATCTGGTGGCC
AACCCCATCCGCTTCGACGGCGCCCAGGCCCTGTCCGACCGCGCCCCGCCCCTGCTGGGCGCCGACACCGCCGAGGTGCT
GGGCGGATGGCTGGGGATGGGGGCGGACGAGATGGAACGGTTGAGGGAGAACGGGGTGGTGTGA

Upstream 100 bases:

>100_bases
GTGTGTCGCTGTTCGGCGGCACCGCCGAGTACATCGCCCTGTGGTTCAAGAGCATGGGCAACGAGACCTGGTTCTACTGG
TACGTGACCGGCTGCTGCCT

Downstream 100 bases:

>100_bases
GGCCACCCCTCGGTTTTCCACATATAGACATAACCCAATGGTATGCGCTCTCATGGTGCTGTAATCGCCGCCAAGGGAGG
GATGGCATGGCCGCACCCCA

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MRIAAVRRHEGHQEDLADRPGLTLLSPGGSSPEPPVFSFSKDSIMTGPLSHLRVLDLSRVLAGPWAGQLLADMGAEVIKV
ERPGEGDDTRGWGPPFLKDGQGGDTGEAAYFLSANRGKRSVTIDFTQAQGQELVRRLAARSDVVLENFKVGGLAKYGLDY
ASLKAVKPDLVYCSITGFGQDGPYAQRAGYDFLIQGMGGLMSLTGEPGGQPMKVGVALTDIFTGMYAGFAILAALAKRDR
TGEGSQIDLALLDVQVAVLANQATNYLVGGATPKRLGNAHPNIVPYQAFATADGHIILAVGNDGQFRRFCHTAGRPELGA
DPRFATNVERVRNRAELVPLLEALLTSRPSARWIAELEEAGVPCGPINDLANVFADPQVIHRGLRTRLDHPLAGGIDLVA
NPIRFDGAQALSDRAPPLLGADTAEVLGGWLGMGADEMERLRENGVV

Sequences:

>Translated_447_residues
MRIAAVRRHEGHQEDLADRPGLTLLSPGGSSPEPPVFSFSKDSIMTGPLSHLRVLDLSRVLAGPWAGQLLADMGAEVIKV
ERPGEGDDTRGWGPPFLKDGQGGDTGEAAYFLSANRGKRSVTIDFTQAQGQELVRRLAARSDVVLENFKVGGLAKYGLDY
ASLKAVKPDLVYCSITGFGQDGPYAQRAGYDFLIQGMGGLMSLTGEPGGQPMKVGVALTDIFTGMYAGFAILAALAKRDR
TGEGSQIDLALLDVQVAVLANQATNYLVGGATPKRLGNAHPNIVPYQAFATADGHIILAVGNDGQFRRFCHTAGRPELGA
DPRFATNVERVRNRAELVPLLEALLTSRPSARWIAELEEAGVPCGPINDLANVFADPQVIHRGLRTRLDHPLAGGIDLVA
NPIRFDGAQALSDRAPPLLGADTAEVLGGWLGMGADEMERLRENGVV
>Mature_447_residues
MRIAAVRRHEGHQEDLADRPGLTLLSPGGSSPEPPVFSFSKDSIMTGPLSHLRVLDLSRVLAGPWAGQLLADMGAEVIKV
ERPGEGDDTRGWGPPFLKDGQGGDTGEAAYFLSANRGKRSVTIDFTQAQGQELVRRLAARSDVVLENFKVGGLAKYGLDY
ASLKAVKPDLVYCSITGFGQDGPYAQRAGYDFLIQGMGGLMSLTGEPGGQPMKVGVALTDIFTGMYAGFAILAALAKRDR
TGEGSQIDLALLDVQVAVLANQATNYLVGGATPKRLGNAHPNIVPYQAFATADGHIILAVGNDGQFRRFCHTAGRPELGA
DPRFATNVERVRNRAELVPLLEALLTSRPSARWIAELEEAGVPCGPINDLANVFADPQVIHRGLRTRLDHPLAGGIDLVA
NPIRFDGAQALSDRAPPLLGADTAEVLGGWLGMGADEMERLRENGVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=400, Percent_Identity=44.75, Blast_Score=359, Evalue=3e-99,
Organism=Homo sapiens, GI300863124, Length=426, Percent_Identity=42.018779342723, Blast_Score=345, Evalue=5e-95,
Organism=Homo sapiens, GI13376042, Length=426, Percent_Identity=38.9671361502347, Blast_Score=301, Evalue=1e-81,
Organism=Homo sapiens, GI300863126, Length=400, Percent_Identity=39, Blast_Score=296, Evalue=3e-80,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=25.1243781094527, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI42794625, Length=402, Percent_Identity=25.1243781094527, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI266458397, Length=261, Percent_Identity=31.0344827586207, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458393, Length=261, Percent_Identity=31.0344827586207, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458395, Length=151, Percent_Identity=34.4370860927152, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI42822893, Length=151, Percent_Identity=34.4370860927152, Blast_Score=86, Evalue=6e-17,
Organism=Escherichia coli, GI87082093, Length=362, Percent_Identity=37.292817679558, Blast_Score=261, Evalue=6e-71,
Organism=Escherichia coli, GI1788717, Length=425, Percent_Identity=28.9411764705882, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1786222, Length=414, Percent_Identity=25.8454106280193, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI115535051, Length=261, Percent_Identity=28.3524904214559, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=370, Percent_Identity=22.4324324324324, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=47, Blast_Score=365, Evalue=1e-101,
Organism=Drosophila melanogaster, GI24585488, Length=347, Percent_Identity=27.0893371757925, Blast_Score=107, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 47560; Mature: 47560

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAAVRRHEGHQEDLADRPGLTLLSPGGSSPEPPVFSFSKDSIMTGPLSHLRVLDLSRV
CCCCCCHHCCCCHHHHHCCCCCEEECCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHH
LAGPWAGQLLADMGAEVIKVERPGEGDDTRGWGPPFLKDGQGGDTGEAAYFLSANRGKRS
HCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
VTIDFTQAQGQELVRRLAARSDVVLENFKVGGLAKYGLDYASLKAVKPDLVYCSITGFGQ
EEEEEHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHCCCHHHHHCCCCCEEEEEEECCCC
DGPYAQRAGYDFLIQGMGGLMSLTGEPGGQPMKVGVALTDIFTGMYAGFAILAALAKRDR
CCCHHHHCCCHHEECCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
TGEGSQIDLALLDVQVAVLANQATNYLVGGATPKRLGNAHPNIVPYQAFATADGHIILAV
CCCCCEEEEEEEHHHHHHHHHCCCCEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEE
GNDGQFRRFCHTAGRPELGADPRFATNVERVRNRAELVPLLEALLTSRPSARWIAELEEA
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GVPCGPINDLANVFADPQVIHRGLRTRLDHPLAGGIDLVANPIRFDGAQALSDRAPPLLG
CCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCC
ADTAEVLGGWLGMGADEMERLRENGVV
CCHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MRIAAVRRHEGHQEDLADRPGLTLLSPGGSSPEPPVFSFSKDSIMTGPLSHLRVLDLSRV
CCCCCCHHCCCCHHHHHCCCCCEEECCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHH
LAGPWAGQLLADMGAEVIKVERPGEGDDTRGWGPPFLKDGQGGDTGEAAYFLSANRGKRS
HCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
VTIDFTQAQGQELVRRLAARSDVVLENFKVGGLAKYGLDYASLKAVKPDLVYCSITGFGQ
EEEEEHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHCCCHHHHHCCCCCEEEEEEECCCC
DGPYAQRAGYDFLIQGMGGLMSLTGEPGGQPMKVGVALTDIFTGMYAGFAILAALAKRDR
CCCHHHHCCCHHEECCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
TGEGSQIDLALLDVQVAVLANQATNYLVGGATPKRLGNAHPNIVPYQAFATADGHIILAV
CCCCCEEEEEEEHHHHHHHHHCCCCEEECCCCHHHHCCCCCCEEEEEEEECCCCEEEEEE
GNDGQFRRFCHTAGRPELGADPRFATNVERVRNRAELVPLLEALLTSRPSARWIAELEEA
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GVPCGPINDLANVFADPQVIHRGLRTRLDHPLAGGIDLVANPIRFDGAQALSDRAPPLLG
CCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCC
ADTAEVLGGWLGMGADEMERLRENGVV
CCHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]