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The map label for this gene is hypD2 [H]

Identifier: 83310738

GI number: 83310738

Start: 1778045

End: 1779184

Strand: Reverse

Name: hypD2 [H]

Synonym: amb1639

Alternate gene names: 83310738

Gene position: 1779184-1778045 (Counterclockwise)

Preceding gene: 83310739

Following gene: 83310737

Centisome position: 35.82

GC content: 66.93

Gene sequence:

>1140_bases
GTGAAATACATCGACGAATTTCGCGACGGCGAGGTGGCGCAAAGCATCGCCCAGGCCATCAAGGCCGAGGCCGATCCCGG
CTCCACCTATCACATCATGGAGTTCTGCGGCGGCCACACCCATGCCATCTCGCGCTATGGGCTGGAGGATTTGCTGCCCG
CCAATGTGCGGATGATCCACGGGCCGGGCTGCCCGGTCTGCGTCCTGCCCGTCGGCCGCATCGACGCCGCCATCTGGCTG
GCCAAGCAGCCGGGCGTCACCCTGGTCACCTATGGCGACATGCTGCGGGTGCCGGGCTCGAAGCGCCTGTCGCTGCTGAA
GGCCAAGGCCGAGGGCGCCGACGTGCGCATGGTCTATTCCACCCTGGACGCCATCAAGCTGGCCCAAGCCAACCCCGACC
GCCAGGTGGTGTTCTTCGCCATCGGCTTCGAGACCACCACGCCGCCCACCGCCGTGGCCATCAAACAGGCCCAGGCGCTG
GACCTGAAGAATTTCAGCGTGTTCTGCAACCACGTGCTGACGCCGTCGGCCATCACCCAGATTCTCGACAGCCCGGAAGT
GCGCGAGCTGGGCACGGTCAAGCTGGACGCCTTCATCGGCCCGGCCCATGTGTCAACCATCATCGGCTCGCGACCCTACG
AATACTTCGCCGAGGAATACCAGCGCCCGGTGGTGATCGCCGGCTTCGAGCCGCTGGACGTCATGCAGGCGGTGCGCATG
CTGGTCCGCCAGATCAACGACGGCCGCTTCGAGGTGGAGAACGAGTTCGCCCGCGCCGTGACTCGCGACGGCAACGAGAA
GGCCAAGTCCCTGGTGGCCGACATGTTCGAGCTTCGGCGCGCCTTCGAGTGGCGGGGCCTCGGACTGGTGCCCTATTCGG
CGCTGCGCCTCAAGGAGCCCTATGCCGCCTGGGACGCCGAGCGCCGCTGGGACGTGCCCCAGGACAGCCCGCCCGACAAC
AAGGCCTGCGAATGCGGCGCCATCCTCAGGGGCGTCAAGAAGCCCACCGATTGCAAGCTGTTCGGCACCGTGTGCACCCC
CGAGAACCCCATGGGCTCGTGCATGGTCTCGGCCGAAGGCGCCTGCGCCGCCCATTGGACCTACGGCCGCTTCCGCGACC
TGGAGACGAGCCATGCCTGA

Upstream 100 bases:

>100_bases
TCCACGTGGGCTACGCCCTGTCGGTGATCGATCCGGAAGAGGCGGCCCGCACCCTCGAGCTGTTCCGCGAGATGGGCGAA
CTGGCCGAGGACGTGCCGGC

Downstream 100 bases:

>100_bases
GATCAGCCGGTTCCTGGGCATGATCATCGCCATGTATTACGACGACCATGCGCCGCCCCACTTCCATGTCCGTTATGGTG
ACCGCGAGGCGGTGATCCGC

Product: hydrogenase expression/formation protein hypD2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKYIDEFRDGEVAQSIAQAIKAEADPGSTYHIMEFCGGHTHAISRYGLEDLLPANVRMIHGPGCPVCVLPVGRIDAAIWL
AKQPGVTLVTYGDMLRVPGSKRLSLLKAKAEGADVRMVYSTLDAIKLAQANPDRQVVFFAIGFETTTPPTAVAIKQAQAL
DLKNFSVFCNHVLTPSAITQILDSPEVRELGTVKLDAFIGPAHVSTIIGSRPYEYFAEEYQRPVVIAGFEPLDVMQAVRM
LVRQINDGRFEVENEFARAVTRDGNEKAKSLVADMFELRRAFEWRGLGLVPYSALRLKEPYAAWDAERRWDVPQDSPPDN
KACECGAILRGVKKPTDCKLFGTVCTPENPMGSCMVSAEGACAAHWTYGRFRDLETSHA

Sequences:

>Translated_379_residues
MKYIDEFRDGEVAQSIAQAIKAEADPGSTYHIMEFCGGHTHAISRYGLEDLLPANVRMIHGPGCPVCVLPVGRIDAAIWL
AKQPGVTLVTYGDMLRVPGSKRLSLLKAKAEGADVRMVYSTLDAIKLAQANPDRQVVFFAIGFETTTPPTAVAIKQAQAL
DLKNFSVFCNHVLTPSAITQILDSPEVRELGTVKLDAFIGPAHVSTIIGSRPYEYFAEEYQRPVVIAGFEPLDVMQAVRM
LVRQINDGRFEVENEFARAVTRDGNEKAKSLVADMFELRRAFEWRGLGLVPYSALRLKEPYAAWDAERRWDVPQDSPPDN
KACECGAILRGVKKPTDCKLFGTVCTPENPMGSCMVSAEGACAAHWTYGRFRDLETSHA
>Mature_379_residues
MKYIDEFRDGEVAQSIAQAIKAEADPGSTYHIMEFCGGHTHAISRYGLEDLLPANVRMIHGPGCPVCVLPVGRIDAAIWL
AKQPGVTLVTYGDMLRVPGSKRLSLLKAKAEGADVRMVYSTLDAIKLAQANPDRQVVFFAIGFETTTPPTAVAIKQAQAL
DLKNFSVFCNHVLTPSAITQILDSPEVRELGTVKLDAFIGPAHVSTIIGSRPYEYFAEEYQRPVVIAGFEPLDVMQAVRM
LVRQINDGRFEVENEFARAVTRDGNEKAKSLVADMFELRRAFEWRGLGLVPYSALRLKEPYAAWDAERRWDVPQDSPPDN
KACECGAILRGVKKPTDCKLFGTVCTPENPMGSCMVSAEGACAAHWTYGRFRDLETSHA

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=373, Percent_Identity=46.112600536193, Blast_Score=348, Evalue=4e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41781; Mature: 41781

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYIDEFRDGEVAQSIAQAIKAEADPGSTYHIMEFCGGHTHAISRYGLEDLLPANVRMIH
CCCHHHHCCCHHHHHHHHHHHCCCCCCCEEEHHHHHCCCHHHHHHCCHHHCCCCCEEEEE
GPGCPVCVLPVGRIDAAIWLAKQPGVTLVTYGDMLRVPGSKRLSLLKAKAEGADVRMVYS
CCCCCEEEEECCCCCEEEEEECCCCEEEEEECCEEECCCCHHHHHEECCCCCCCEEHHHH
TLDAIKLAQANPDRQVVFFAIGFETTTPPTAVAIKQAQALDLKNFSVFCNHVLTPSAITQ
HHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHEEHHHHHCCCCHHHHHHHHCCCHHHHHH
ILDSPEVRELGTVKLDAFIGPAHVSTIIGSRPYEYFAEEYQRPVVIAGFEPLDVMQAVRM
HHCCCCCHHCCCEEEEEEECHHHHHHHHCCCCHHHHHHHHCCCEEEECCCHHHHHHHHHH
LVRQINDGRFEVENEFARAVTRDGNEKAKSLVADMFELRRAFEWRGLGLVPYSALRLKEP
HHHHHCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC
YAAWDAERRWDVPQDSPPDNKACECGAILRGVKKPTDCKLFGTVCTPENPMGSCMVSAEG
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEECCC
ACAAHWTYGRFRDLETSHA
CEEEEECCHHHHCCCCCCC
>Mature Secondary Structure
MKYIDEFRDGEVAQSIAQAIKAEADPGSTYHIMEFCGGHTHAISRYGLEDLLPANVRMIH
CCCHHHHCCCHHHHHHHHHHHCCCCCCCEEEHHHHHCCCHHHHHHCCHHHCCCCCEEEEE
GPGCPVCVLPVGRIDAAIWLAKQPGVTLVTYGDMLRVPGSKRLSLLKAKAEGADVRMVYS
CCCCCEEEEECCCCCEEEEEECCCCEEEEEECCEEECCCCHHHHHEECCCCCCCEEHHHH
TLDAIKLAQANPDRQVVFFAIGFETTTPPTAVAIKQAQALDLKNFSVFCNHVLTPSAITQ
HHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHEEHHHHHCCCCHHHHHHHHCCCHHHHHH
ILDSPEVRELGTVKLDAFIGPAHVSTIIGSRPYEYFAEEYQRPVVIAGFEPLDVMQAVRM
HHCCCCCHHCCCEEEEEEECHHHHHHHHCCCCHHHHHHHHCCCEEEECCCHHHHHHHHHH
LVRQINDGRFEVENEFARAVTRDGNEKAKSLVADMFELRRAFEWRGLGLVPYSALRLKEP
HHHHHCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC
YAAWDAERRWDVPQDSPPDNKACECGAILRGVKKPTDCKLFGTVCTPENPMGSCMVSAEG
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEECCC
ACAAHWTYGRFRDLETSHA
CEEEEECCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]