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The map label for this gene is cph1 [H]

Identifier: 83310510

GI number: 83310510

Start: 1536234

End: 1537742

Strand: Reverse

Name: cph1 [H]

Synonym: amb1411

Alternate gene names: 83310510

Gene position: 1537742-1536234 (Counterclockwise)

Preceding gene: 83310511

Following gene: 83310508

Centisome position: 30.96

GC content: 63.68

Gene sequence:

>1509_bases
ATGATGATGATGCTGTTGCGCAAGAAGGGACGGGAAAACAGGATCGGCCGCCGCCTGATCGTTCTGATCGTCACATTCAG
CTCCTTTCTGGCCTTATTGGCGACCGCCTATCAGCTTATCCACGAATACCGGCAACAACGTGCCGACATGGACGATCAAC
TGGAGGAGGTCAGGATCTTCCTGCCGCCCATTACGGGCAGCGTCTGGACTCTTGACGAGCAACAGATCACCCTGGCCCTG
GATTCCCTGACCCGGCTTCCCCATGTGGAGCACGTGGTGATCACCACGGTGGACAGCCGCAACACCTGGTCGTCGGGCAC
GATCAAGTCCGGGCGCCTTCTCAGCCGCCAATACCCCCTTTCGCGCGAAATCCGCGGCGAGACGCAGCGGATCGCCACCC
TGGACGTCACGGCCAGCCTGGACGGCATCTATGACCGCCTGCTGAGCCAGGCCATCACCATCTTGGCCAGCAACGCGATA
AAGACCTTCCTGGTCGCGGCGTTCATGTACGTGATCTTCAGCCACCTCGTCACCCGGCGGGTCGAGGAACTGGCCCGCAG
CGTCGGCAATCTGGTGCCGGAATCCCTGATGACGCAGGCGTCAATTTATGACGAACGCCTGGGCTTTCCCGAGAATGGCG
ACGAGATCGACCGTCTGCGCTGGGCCTATGACAACATCGGCCGCCAGTTGCACCTTGCGGCGCAGGATTTGCGCGACCGC
CACGACGAATTGCAGCATGAAATCCAGGAACGTACTCGGGCGGAAAGCGACCTGCAGCAGGTGATCGCCGAACTGTCGCG
GACCAATGCCGAACTGGAACGCTTCGCCTATGTGGCCGCCCACGACCTGCAGGAGCCGGTGCGCGGCCTGGTCAGCTTCT
CCCAGTTGCTCGAGCGCAAATACGCGGTCGATCTGGAGGGCGAGGGTAAGGACTACCTGCGCTTCATCATCGCCGAGGCG
CAACGCATGTCCAATCTGGTGCGCGACCTGCTGGAATACAGCCGGGCCGGCGGCGCCGGCCTGACGGTGGCCACCGTGGA
TTGCGCCGAACTGGTCGAGTCCGTGGTCCAGAGCCTGCGGCCGCGCATCGAGCAGAAGGGAGCCCGGCTGGAAATCGGCC
CGTTGCCAAGCCTGTCCGCCGACCGGGGACAATTGTATCAGGTCTTCCACAACCTGCTGGGCAATGCCCTCAAATACGGC
GCCGAGAATGCCGTCCCCGAGGTGCGGATCAGCGCCGAGCGGGACGGCGCGGCCTGGCGCTTCGCGGTGGCCGACAACGG
CATCGGCATCGACGCGCAGTACCATGACTACGTCTTCGAGGTGTTCCGCCGCCTCCACACCACCGCGGCCTATTCCGGCA
CCGGCATTGGCCTGGCCATCTGCAAGCGCATCGTGGAAAGCCATGGCGGCCGCATGTGCCTGACCTCCACCCCGGGCCAG
GGCTCCACCTTCTTCTTCACCATTCCCGATCAGGTGGCCGAACAGGCGGCGGTGACGGCCCAGGCCTGA

Upstream 100 bases:

>100_bases
GATTGACCATCGAAGGCGTTCCAAAGCCAAACCTAAAGTAGTCCATACGAATGCTTTGGGCTCGTATCCCTTCAGAGATG
CGTTTAGGCTGTCCCGCATC

Downstream 100 bases:

>100_bases
AGTCAGGCGGCCGCCGCCGGCAGGGTGAAGTGGAAGGAACTTCCCTCGCCGGGCCGGCTGTCGACCCAGATCCGCCCGCC
GTGGCGTTCGACGATCTTCT

Product: sensor kinase silS

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MMMMLLRKKGRENRIGRRLIVLIVTFSSFLALLATAYQLIHEYRQQRADMDDQLEEVRIFLPPITGSVWTLDEQQITLAL
DSLTRLPHVEHVVITTVDSRNTWSSGTIKSGRLLSRQYPLSREIRGETQRIATLDVTASLDGIYDRLLSQAITILASNAI
KTFLVAAFMYVIFSHLVTRRVEELARSVGNLVPESLMTQASIYDERLGFPENGDEIDRLRWAYDNIGRQLHLAAQDLRDR
HDELQHEIQERTRAESDLQQVIAELSRTNAELERFAYVAAHDLQEPVRGLVSFSQLLERKYAVDLEGEGKDYLRFIIAEA
QRMSNLVRDLLEYSRAGGAGLTVATVDCAELVESVVQSLRPRIEQKGARLEIGPLPSLSADRGQLYQVFHNLLGNALKYG
AENAVPEVRISAERDGAAWRFAVADNGIGIDAQYHDYVFEVFRRLHTTAAYSGTGIGLAICKRIVESHGGRMCLTSTPGQ
GSTFFFTIPDQVAEQAAVTAQA

Sequences:

>Translated_502_residues
MMMMLLRKKGRENRIGRRLIVLIVTFSSFLALLATAYQLIHEYRQQRADMDDQLEEVRIFLPPITGSVWTLDEQQITLAL
DSLTRLPHVEHVVITTVDSRNTWSSGTIKSGRLLSRQYPLSREIRGETQRIATLDVTASLDGIYDRLLSQAITILASNAI
KTFLVAAFMYVIFSHLVTRRVEELARSVGNLVPESLMTQASIYDERLGFPENGDEIDRLRWAYDNIGRQLHLAAQDLRDR
HDELQHEIQERTRAESDLQQVIAELSRTNAELERFAYVAAHDLQEPVRGLVSFSQLLERKYAVDLEGEGKDYLRFIIAEA
QRMSNLVRDLLEYSRAGGAGLTVATVDCAELVESVVQSLRPRIEQKGARLEIGPLPSLSADRGQLYQVFHNLLGNALKYG
AENAVPEVRISAERDGAAWRFAVADNGIGIDAQYHDYVFEVFRRLHTTAAYSGTGIGLAICKRIVESHGGRMCLTSTPGQ
GSTFFFTIPDQVAEQAAVTAQA
>Mature_502_residues
MMMMLLRKKGRENRIGRRLIVLIVTFSSFLALLATAYQLIHEYRQQRADMDDQLEEVRIFLPPITGSVWTLDEQQITLAL
DSLTRLPHVEHVVITTVDSRNTWSSGTIKSGRLLSRQYPLSREIRGETQRIATLDVTASLDGIYDRLLSQAITILASNAI
KTFLVAAFMYVIFSHLVTRRVEELARSVGNLVPESLMTQASIYDERLGFPENGDEIDRLRWAYDNIGRQLHLAAQDLRDR
HDELQHEIQERTRAESDLQQVIAELSRTNAELERFAYVAAHDLQEPVRGLVSFSQLLERKYAVDLEGEGKDYLRFIIAEA
QRMSNLVRDLLEYSRAGGAGLTVATVDCAELVESVVQSLRPRIEQKGARLEIGPLPSLSADRGQLYQVFHNLLGNALKYG
AENAVPEVRISAERDGAAWRFAVADNGIGIDAQYHDYVFEVFRRLHTTAAYSGTGIGLAICKRIVESHGGRMCLTSTPGQ
GSTFFFTIPDQVAEQAAVTAQA

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081816, Length=303, Percent_Identity=29.3729372937294, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI48994928, Length=297, Percent_Identity=27.2727272727273, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1786912, Length=241, Percent_Identity=32.7800829875519, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1789149, Length=299, Percent_Identity=25.4180602006689, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790436, Length=224, Percent_Identity=31.25, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788549, Length=238, Percent_Identity=29.4117647058824, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1788393, Length=268, Percent_Identity=28.7313432835821, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788713, Length=240, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI145693157, Length=254, Percent_Identity=26.7716535433071, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790346, Length=266, Percent_Identity=28.1954887218045, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786600, Length=226, Percent_Identity=30.5309734513274, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1790300, Length=222, Percent_Identity=30.6306306306306, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082128, Length=230, Percent_Identity=25.2173913043478, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 56364; Mature: 56364

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMMLLRKKGRENRIGRRLIVLIVTFSSFLALLATAYQLIHEYRQQRADMDDQLEEVRIF
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEE
LPPITGSVWTLDEQQITLALDSLTRLPHVEHVVITTVDSRNTWSSGTIKSGRLLSRQYPL
ECCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCCC
SREIRGETQRIATLDVTASLDGIYDRLLSQAITILASNAIKTFLVAAFMYVIFSHLVTRR
CHHHCCCHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEELARSVGNLVPESLMTQASIYDERLGFPENGDEIDRLRWAYDNIGRQLHLAAQDLRDR
HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEEHHHHHHHHHH
HDELQHEIQERTRAESDLQQVIAELSRTNAELERFAYVAAHDLQEPVRGLVSFSQLLERK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAVDLEGEGKDYLRFIIAEAQRMSNLVRDLLEYSRAGGAGLTVATVDCAELVESVVQSLR
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHH
PRIEQKGARLEIGPLPSLSADRGQLYQVFHNLLGNALKYGAENAVPEVRISAERDGAAWR
HHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEE
FAVADNGIGIDAQYHDYVFEVFRRLHTTAAYSGTGIGLAICKRIVESHGGRMCLTSTPGQ
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
GSTFFFTIPDQVAEQAAVTAQA
CCEEEEECCHHHHHHHHHHCCC
>Mature Secondary Structure
MMMMLLRKKGRENRIGRRLIVLIVTFSSFLALLATAYQLIHEYRQQRADMDDQLEEVRIF
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEE
LPPITGSVWTLDEQQITLALDSLTRLPHVEHVVITTVDSRNTWSSGTIKSGRLLSRQYPL
ECCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCCC
SREIRGETQRIATLDVTASLDGIYDRLLSQAITILASNAIKTFLVAAFMYVIFSHLVTRR
CHHHCCCHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEELARSVGNLVPESLMTQASIYDERLGFPENGDEIDRLRWAYDNIGRQLHLAAQDLRDR
HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEEHHHHHHHHHH
HDELQHEIQERTRAESDLQQVIAELSRTNAELERFAYVAAHDLQEPVRGLVSFSQLLERK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAVDLEGEGKDYLRFIIAEAQRMSNLVRDLLEYSRAGGAGLTVATVDCAELVESVVQSLR
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHH
PRIEQKGARLEIGPLPSLSADRGQLYQVFHNLLGNALKYGAENAVPEVRISAERDGAAWR
HHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEE
FAVADNGIGIDAQYHDYVFEVFRRLHTTAAYSGTGIGLAICKRIVESHGGRMCLTSTPGQ
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
GSTFFFTIPDQVAEQAAVTAQA
CCEEEEECCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]